Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-224 |
| Cow position: | chr28:9953979-9953756 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 9, 127 |
| Conread position: | 1-290 |
| Cow position: | chr28:9155442-9155709 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 86, 52 |
| Conread position: | 1-320 |
| Cow position: | chr28:3773989-3774311 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 123 |
| Conread position: | 1-474 |
| Cow position: | chr28:34648779-34648332 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 321 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 86, 24 |
| Conread position: | 1-475 |
| Cow position: | chr28:26007876-26007412 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 35 |
| Conread position: | 1-476 |
| Cow position: | chr28:2591763-2591321 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 1-477 |
| Cow position: | chr28:6657501-6657957 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 313 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 227, 18 |
| Conread position: | 1-477 |
| Cow position: | chr28:12150164-12149708 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 11 |
| Conread position: | 1-487 |
| Cow position: | chr28:1952977-1952475 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 65 |
| Conread position: | 1-487 |
| Cow position: | chr28:3192948-3193406 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 73 |
| Conread position: | 1-492 |
| Cow position: | chr28:15681736-15681278 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 126 |
| Conread position: | 1-492 |
| Cow position: | chr28:21325631-21325148 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 17 |
| Conread position: | 1-492 |
| Cow position: | chr28:21358862-21358380 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 11 |
| Conread position: | 2-205 |
| Cow position: | chr28:1815024-1815228 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 2-460 |
| Cow position: | chr28:1387550-1387994 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 10 |
| Conread position: | 2-476 |
| Cow position: | chr28:18089160-18089622 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 2-477 |
| Cow position: | chr28:8378408-8377941 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 10 |
| Conread position: | 2-487 |
| Cow position: | chr28:5812552-5812075 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 126 |
| Conread position: | 4-474 |
| Cow position: | chr28:22827893-22827440 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 90 |
| Conread position: | 4-477 |
| Cow position: | chr28:29819409-29818953 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 8 |
| Conread position: | 5-194 |
| Cow position: | chr28:7822093-7821915 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 160, 90 |
| Conread position: | 5-486 |
| Cow position: | chr28:5115240-5115707 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 125 |
| Conread position: | 7-477 |
| Cow position: | chr28:34593680-34593224 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 122 |
| Conread position: | 7-492 |
| Cow position: | chr28:10619262-10619740 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 85 |
| Conread position: | 8-182 |
| Cow position: | chr28:24587269-24587098 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 153, 101 |
| Conread position: | 8-198 |
| Cow position: | chr28:7901189-7901005 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 154, 8 |
| Conread position: | 8-283 |
| Cow position: | chr28:15920630-15920899 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 157, 101 |
| Conread position: | 8-423 |
| Cow position: | chr28:7001824-7001436 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 121 |
| Conread position: | 8-429 |
| Cow position: | chr28:17388317-17387908 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-442 |
| Cow position: | chr28:14750384-14749951 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-453 |
| Cow position: | chr28:14705836-14706264 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 17 |
| Conread position: | 8-457 |
| Cow position: | chr28:18181519-18181941 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 154, 87 |
| Conread position: | 8-465 |
| Cow position: | chr28:32792543-32792979 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 121 |
| Conread position: | 8-466 |
| Cow position: | chr28:782234-781788 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-473 |
| Cow position: | chr28:18520625-18521083 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 119 |
| Conread position: | 8-477 |
| Cow position: | chr28:13459807-13459354 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 106 |
| Conread position: | 8-486 |
| Cow position: | chr28:5565697-5565228 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr28:10582149-10582616 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 121 |
| Conread position: | 8-486 |
| Cow position: | chr28:13522563-13522103 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr28:17667676-17668147 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 121 |
| Conread position: | 8-486 |
| Cow position: | chr28:22261315-22261774 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr28:26426438-26426890 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 448, 17 |
| Conread position: | 8-487 |
| Cow position: | chr28:1168328-1168799 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-489 |
| Cow position: | chr28:13441041-13441543 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-489 |
| Cow position: | chr28:15950817-15950315 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-492 |
| Cow position: | chr28:6780493-6780992 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 88 |
| Conread position: | 12-456 |
| Cow position: | chr28:7817064-7816643 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 47 |
| Conread position: | 12-474 |
| Cow position: | chr28:2083436-2082987 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 117 |
| Conread position: | 12-492 |
| Cow position: | chr28:8721610-8722097 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 119 |
| Conread position: | 15-492 |
| Cow position: | chr28:5796650-5796182 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 79 |
| Conread position: | 41-492 |
| Cow position: | chr28:7790436-7790870 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 87 |
| Conread position: | 49-487 |
| Cow position: | chr28:489285-488826 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 74 |
| Conread position: | 59-486 |
| Cow position: | chr28:33252129-33251686 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 71 |
| Conread position: | 64-395 |
| Cow position: | chr28:7740035-7739714 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 64-475 |
| Cow position: | chr28:2990186-2990589 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 46 |
| Conread position: | 64-486 |
| Cow position: | chr28:5752380-5752793 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 66 |
| Conread position: | 67-477 |
| Cow position: | chr28:1504418-1504021 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 62 |
| Conread position: | 68-466 |
| Cow position: | chr28:15035640-15036026 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 68-486 |
| Cow position: | chr28:28973450-28973849 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 286 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 72-476 |
| Cow position: | chr28:10464077-10464463 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 74-469 |
| Cow position: | chr28:15378244-15378626 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 56 |
| Conread position: | 78-487 |
| Cow position: | chr28:24667380-24666979 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 52 |
| Conread position: | 220-489 |
| Cow position: | chr28:6663897-6663625 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 230-468 |
| Cow position: | chr28:4381760-4382002 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 125, 85 |
| Conread position: | 232-489 |
| Cow position: | chr28:7821078-7820822 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 49, 64 |
Show alignments to all cow chromosomes.