Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-253 |
| Cow position: | chr29:14013281-14013030 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 124, 75 |
| Conread position: | 1-253 |
| Cow position: | chr29:14073130-14073383 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 95, 75 |
| Conread position: | 1-317 |
| Cow position: | chr29:15895038-15895354 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 126 |
| Conread position: | 1-468 |
| Cow position: | chr29:16769941-16769509 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-488 |
| Cow position: | chr29:35296687-35296202 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 49 |
| Conread position: | 2-111 |
| Cow position: | chr29:13853211-13853321 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 2-217 |
| Cow position: | chr29:12796656-12796869 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 7, 62 |
| Conread position: | 2-423 |
| Cow position: | chr29:11049092-11048690 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 130 |
| Conread position: | 2-454 |
| Cow position: | chr29:20250969-20250527 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 113 |
| Conread position: | 2-466 |
| Cow position: | chr29:34800000-34800432 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 2-472 |
| Cow position: | chr29:803519-803977 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 97, 23 |
| Conread position: | 2-473 |
| Cow position: | chr29:10648438-10648890 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 2-474 |
| Cow position: | chr29:30811342-30810909 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 327 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 161, 10 |
| Conread position: | 2-477 |
| Cow position: | chr29:19623437-19623899 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 2-486 |
| Cow position: | chr29:45459526-45459056 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 4-210 |
| Cow position: | chr29:2468135-2468340 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 159, 14 |
| Conread position: | 6-486 |
| Cow position: | chr29:10824155-10824625 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 90 |
| Conread position: | 7-429 |
| Cow position: | chr29:32539613-32539204 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 93 |
| Conread position: | 7-486 |
| Cow position: | chr29:2689708-2689262 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 112 |
| Conread position: | 7-492 |
| Cow position: | chr29:5957406-5956915 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 123 |
| Conread position: | 8-283 |
| Cow position: | chr29:31121607-31121335 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 111, 45 |
| Conread position: | 8-284 |
| Cow position: | chr29:14368749-14368471 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-317 |
| Cow position: | chr29:28060864-28061174 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-429 |
| Cow position: | chr29:25932742-25933151 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-454 |
| Cow position: | chr29:6266692-6267125 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 65 |
| Conread position: | 8-463 |
| Cow position: | chr29:45587496-45587940 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-466 |
| Cow position: | chr29:23975634-23975191 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-466 |
| Cow position: | chr29:38226795-38226350 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 27 |
| Conread position: | 8-468 |
| Cow position: | chr29:27040958-27041393 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 106 |
| Conread position: | 8-470 |
| Cow position: | chr29:104377-103935 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 17 |
| Conread position: | 8-474 |
| Cow position: | chr29:48674-49127 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-477 |
| Cow position: | chr29:7431414-7431872 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr29:2099646-2099178 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 118 |
| Conread position: | 8-486 |
| Cow position: | chr29:2841563-2842022 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr29:21246370-21245907 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 125 |
| Conread position: | 8-486 |
| Cow position: | chr29:26165020-26165486 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr29:40503177-40503646 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-489 |
| Cow position: | chr29:610809-611310 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 197 |
| Conread position: | 8-489 |
| Cow position: | chr29:15969346-15969839 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 157, 87 |
| Conread position: | 8-489 |
| Cow position: | chr29:16109531-16109028 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 116 |
| Conread position: | 8-489 |
| Cow position: | chr29:27250533-27251032 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 98 |
| Conread position: | 8-492 |
| Cow position: | chr29:13578219-13577725 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 337 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 157, 75 |
| Conread position: | 8-492 |
| Cow position: | chr29:19652910-19652433 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-492 |
| Cow position: | chr29:43322361-43321878 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 122 |
| Conread position: | 12-268 |
| Cow position: | chr29:9643923-9644180 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 117 |
| Conread position: | 12-477 |
| Cow position: | chr29:39079908-39080361 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 117 |
| Conread position: | 12-489 |
| Cow position: | chr29:32315838-32315340 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 108 |
| Conread position: | 12-492 |
| Cow position: | chr29:2750589-2751053 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 15-466 |
| Cow position: | chr29:16022326-16021890 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 321 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 129, 56 |
| Conread position: | 16-211 |
| Cow position: | chr29:7840590-7840397 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 149, 79 |
| Conread position: | 21-470 |
| Cow position: | chr29:34751904-34752320 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 86 |
| Conread position: | 24-252 |
| Cow position: | chr29:43366211-43366430 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 138, 58 |
| Conread position: | 26-423 |
| Cow position: | chr29:21543591-21543957 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 137, 69 |
| Conread position: | 86-489 |
| Cow position: | chr29:21431617-21432020 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 100-411 |
| Cow position: | chr29:8663987-8663684 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 126-487 |
| Cow position: | chr29:18857101-18857484 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 39, 193 |
| Conread position: | 129-486 |
| Cow position: | chr29:42650045-42649696 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 129-486 |
| Cow position: | chr29:42801905-42801556 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 188-470 |
| Cow position: | chr29:45464149-45464424 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 230-468 |
| Cow position: | chr29:10848504-10848742 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 167, 183 |
| Conread position: | 234-456 |
| Cow position: | chr29:1714702-1714488 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 245-492 |
| Cow position: | chr29:22318371-22318617 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 262-487 |
| Cow position: | chr29:9644603-9644816 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 304-486 |
| Cow position: | chr29:15984723-15984538 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 152, 111 |
| Conread position: | 305-489 |
| Cow position: | chr29:19884735-19884552 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 329-489 |
| Cow position: | chr29:43366696-43366854 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
Show alignments to all cow chromosomes.