Cow genome map
| Conread name: | Ss1.1-rpigcf0_021389.5 |
| Conread position: | 1-371 |
| Cow position: | chr4:39272409-39272756 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 19 |
| Conread position: | 1-427 |
| Cow position: | chr4:10408312-10407877 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 181 |
| Conread position: | 1-444 |
| Cow position: | chr4:66925535-66925116 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-460 |
| Cow position: | chr4:34185328-34185771 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 47 |
| Conread position: | 1-466 |
| Cow position: | chr4:46712810-46713254 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 128 |
| Conread position: | 1-468 |
| Cow position: | chr4:1371479-1371908 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 82 |
| Conread position: | 1-486 |
| Cow position: | chr4:16359422-16358962 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 435, 64 |
| Conread position: | 1-489 |
| Cow position: | chr4:602529-602019 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 123 |
| Conread position: | 1-492 |
| Cow position: | chr4:16056139-16055613 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 12, 219 |
| Conread position: | 1-492 |
| Cow position: | chr4:28830571-28830099 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 66 |
| Conread position: | 2-272 |
| Cow position: | chr4:6449357-6449624 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 160, 53 |
| Conread position: | 2-466 |
| Cow position: | chr4:355443-354993 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 10 |
| Conread position: | 2-486 |
| Cow position: | chr4:3961124-3960651 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 14 |
| Conread position: | 2-486 |
| Cow position: | chr4:33073855-33074326 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 7 |
| Conread position: | 2-492 |
| Cow position: | chr4:46663734-46663250 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 125 |
| Conread position: | 7-317 |
| Cow position: | chr4:5879704-5879400 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 6, 111 |
| Conread position: | 7-440 |
| Cow position: | chr4:58883149-58883563 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 21, 112 |
| Conread position: | 8-206 |
| Cow position: | chr4:32211691-32211493 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-226 |
| Cow position: | chr4:17926730-17926947 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-260 |
| Cow position: | chr4:12241695-12241943 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 61, 122 |
| Conread position: | 8-316 |
| Cow position: | chr4:1464396-1464697 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 150, 99 |
| Conread position: | 8-317 |
| Cow position: | chr4:65224010-65224320 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 118 |
| Conread position: | 8-395 |
| Cow position: | chr4:31668839-31668479 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 20 |
| Conread position: | 8-453 |
| Cow position: | chr4:44724607-44724183 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-454 |
| Cow position: | chr4:29532190-29532624 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-454 |
| Cow position: | chr4:33493336-33492901 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 123 |
| Conread position: | 8-454 |
| Cow position: | chr4:43880633-43880201 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 79 |
| Conread position: | 8-466 |
| Cow position: | chr4:4905678-4905233 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 122 |
| Conread position: | 8-466 |
| Cow position: | chr4:45049771-45050218 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-477 |
| Cow position: | chr4:1050096-1050556 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-477 |
| Cow position: | chr4:36895898-36895442 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-479 |
| Cow position: | chr4:24445675-24446131 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 45 |
| Conread position: | 8-486 |
| Cow position: | chr4:6490822-6491292 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr4:13492100-13491627 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr4:21338462-21338929 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 47 |
| Conread position: | 8-486 |
| Cow position: | chr4:41330964-41330495 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr4:43320112-43320583 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-486 |
| Cow position: | chr4:48025926-48025458 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 8-487 |
| Cow position: | chr4:47764646-47765146 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-488 |
| Cow position: | chr4:3125305-3124805 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 8-488 |
| Cow position: | chr4:13547552-13547044 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 342 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-489 |
| Cow position: | chr4:101405-101900 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 123 |
| Conread position: | 8-489 |
| Cow position: | chr4:158040-157552 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 79 |
| Conread position: | 8-489 |
| Cow position: | chr4:528517-528017 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 117 |
| Conread position: | 8-489 |
| Cow position: | chr4:6269104-6269598 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 101 |
| Conread position: | 8-489 |
| Cow position: | chr4:9311761-9311259 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 8-492 |
| Cow position: | chr4:18516420-18515937 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 121 |
| Conread position: | 9-224 |
| Cow position: | chr4:11617968-11617747 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 77, 125 |
| Conread position: | 12-477 |
| Cow position: | chr4:41118649-41118194 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 119 |
| Conread position: | 12-489 |
| Cow position: | chr4:23114656-23115153 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 114 |
| Conread position: | 12-489 |
| Cow position: | chr4:41954314-41953829 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 107 |
| Conread position: | 15-489 |
| Cow position: | chr4:1931103-1931571 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 108 |
| Conread position: | 16-492 |
| Cow position: | chr4:30307937-30308414 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 91, 79 |
| Conread position: | 18-429 |
| Cow position: | chr4:3358239-3357844 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 101 |
| Conread position: | 18-486 |
| Cow position: | chr4:57978931-57978480 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 111 |
| Conread position: | 25-225 |
| Cow position: | chr4:3829999-3829804 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 52 |
| Conread position: | 31-190 |
| Cow position: | chr4:60265290-60265445 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 68, 83 |
| Conread position: | 37-456 |
| Cow position: | chr4:8598636-8599033 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 125, 68 |
| Conread position: | 64-476 |
| Cow position: | chr4:21359122-21358737 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 320, 33 |
| Conread position: | 73-460 |
| Cow position: | chr4:54955432-54955041 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 49 |
| Conread position: | 79-486 |
| Cow position: | chr4:25600146-25600547 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 52 |
| Conread position: | 103-487 |
| Cow position: | chr4:32211560-32211155 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 67, 147 |
| Conread position: | 183-489 |
| Cow position: | chr4:24652157-24652461 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 98, 29 |
| Conread position: | 241-422 |
| Cow position: | chr4:4168785-4168607 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 143, 52 |
| Conread position: | 304-487 |
| Cow position: | chr4:17927303-17927488 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 151, 111 |
| Conread position: | 304-489 |
| Cow position: | chr4:6566426-6566242 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 0 |
Show alignments to all cow chromosomes.