Cow genome map


           Conread name:
           Ss1.1-rpigcf0_021389.5
        

               Conread position:
               1-361
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 93
               

               Conread position:
               1-395
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 11
               

               Conread position:
               1-423
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               275
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               74, 164
               

               Conread position:
               1-432
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 185
               

               Conread position:
               1-441
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 126
               

               Conread position:
               1-444
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 32
               

               Conread position:
               1-470
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 95
               

               Conread position:
               1-471
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 130
               

               Conread position:
               1-472
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               322
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               161, 106
               

               Conread position:
               1-474
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 126
               

               Conread position:
               1-476
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               317
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               98, 17
               

               Conread position:
               1-476
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 93
               

               Conread position:
               1-481
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               318
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               111, 57
               

               Conread position:
               1-486
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               373, 126
               

               Conread position:
               1-487
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 109
               

               Conread position:
               1-488
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 126
               

               Conread position:
               1-491
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 108
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 92
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 31
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 89
               

               Conread position:
               2-167
               

               Cow position:
               
               

               Alignm length:
               168
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               115, 10
               

               Conread position:
               2-197
               

               Cow position:
               
               

               Alignm length:
               199
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               14, 129
               

               Conread position:
               2-266
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               97, 16
               

               Conread position:
               2-429
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 10
               

               Conread position:
               2-466
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 10
               

               Conread position:
               2-480
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 14
               

               Conread position:
               2-492
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 10
               

               Conread position:
               6-486
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 58
               

               Conread position:
               6-486
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 123
               

               Conread position:
               7-135
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               7-206
               

               Cow position:
               
               

               Alignm length:
               201
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               155, 28
               

               Conread position:
               7-428
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               273
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               216, 123
               

               Conread position:
               7-466
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 122
               

               Conread position:
               8-210
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               155, 82
               

               Conread position:
               8-254
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-266
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               157, 101
               

               Conread position:
               8-315
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               221
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               157, 101
               

               Conread position:
               8-317
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               218
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               92, 116
               

               Conread position:
               8-391
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-463
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 83
               

               Conread position:
               8-463
               

               Cow position:
               
               

               Alignm length:
               459
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 86
               

               Conread position:
               8-466
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 122
               

               Conread position:
               8-468
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 102
               

               Conread position:
               8-469
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 121
               

               Conread position:
               8-469
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 103
               

               Conread position:
               8-473
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 107
               

               Conread position:
               8-473
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               304
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               162, 72
               

               Conread position:
               8-474
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               311
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               111, 208
               

               Conread position:
               8-477
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               8-477
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 108
               

               Conread position:
               8-478
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 111
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 65
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 122
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               333
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               150, 86
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 117
               

               Conread position:
               8-486
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 121
               

               Conread position:
               8-487
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 69
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 115
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 206
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               329
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               157, 101
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 78
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 115
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 39
               

               Conread position:
               8-489
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 117
               

               Conread position:
               8-491
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 79
               

               Conread position:
               8-492
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               338
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               157, 83
               

               Conread position:
               8-492
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 87
               

               Conread position:
               12-283
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               201
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               147, 57
               

               Conread position:
               12-477
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 117
               

               Conread position:
               12-478
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 118
               

               Conread position:
               12-486
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               433, 73
               

               Conread position:
               12-486
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 117
               

               Conread position:
               12-486
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 83
               

               Conread position:
               12-486
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 103
               

               Conread position:
               15-492
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 70
               

               Conread position:
               16-226
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               78, 115
               

               Conread position:
               16-473
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 113
               

               Conread position:
               17-473
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 112
               

               Conread position:
               19-492
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 103
               

               Conread position:
               32-490
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 78
               

               Conread position:
               48-492
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 49
               

               Conread position:
               49-226
               

               Cow position:
               
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               113, 61
               

               Conread position:
               50-481
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 23
               

               Conread position:
               64-486
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 48
               

               Conread position:
               68-486
               

               Cow position:
               
               

               Alignm length:
               421
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 58
               

               Conread position:
               76-445
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 54
               

               Conread position:
               76-486
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 54
               

               Conread position:
               85-492
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               274
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               22, 36
               

               Conread position:
               87-484
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 43
               

               Conread position:
               99-487
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               274
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               21, 27
               

               Conread position:
               104-486
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 9
               

               Conread position:
               122-486
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               260
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               42, 8
               

               Conread position:
               130-465
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               34, 85
               

               Conread position:
               153-475
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 60
               

               Conread position:
               188-456
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               189-476
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               206-489
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               31, 38
               

               Conread position:
               207-477
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               24, 83
               

               Conread position:
               210-492
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               25, 18
               

               Conread position:
               216-492
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               48, 23
               

               Conread position:
               304-489
               

               Cow position:
               
               

               Alignm length:
               186
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               324-492
               

               Cow position:
               
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               6, 49
               
Show alignments to all cow chromosomes.