Cow genome map

Conread name: Ss1.1-rpigcf0_021389.5

Conread position: 1-166
Cow position: chrX:31198204-31198041 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 128, 0

Conread position: 1-183
Cow position: chrX:6909732-6909911 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 126, 0

Conread position: 1-210
Cow position: chrX:21632981-21633188 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 163, 48

Conread position: 1-217
Cow position: chrX:20803740-20803527 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 98, 57

Conread position: 1-217
Cow position: chrX:24275274-24275059 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 162, 126

Conread position: 1-224
Cow position: chrX:39717403-39717179 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 126, 98

Conread position: 1-253
Cow position: chrX:30142787-30143034 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 157, 84

Conread position: 1-255
Cow position: chrX:4795520-4795275 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 162, 109

Conread position: 1-291
Cow position: chrX:30174056-30174341 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 12, 57

Conread position: 1-311
Cow position: chrX:28634809-28635119 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 213
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 12, 138

Conread position: 1-317
Cow position: chrX:11465395-11465712 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 220
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 12, 74

Conread position: 1-372
Cow position: chrX:5834562-5834908 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 99

Conread position: 1-423
Cow position: chrX:13007031-13007426 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 289
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 162, 99

Conread position: 1-423
Cow position: chrX:26504793-26504383 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 290
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 151, 38

Conread position: 1-453
Cow position: chrX:16275283-16274824 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 315
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 12, 94

Conread position: 1-453
Cow position: chrX:21602491-21602063 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 128

Conread position: 1-457
Cow position: chrX:19927918-19927471 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 18

Conread position: 1-458
Cow position: chrX:31192166-31192602 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 310
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 161, 24

Conread position: 1-468
Cow position: chrX:24122315-24122756 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 113

Conread position: 1-468
Cow position: chrX:24136792-24137227 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 113

Conread position: 1-476
Cow position: chrX:21270579-21271026 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 319
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 158, 84

Conread position: 1-486
Cow position: chrX:2483037-2483508 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 128

Conread position: 1-486
Cow position: chrX:8670199-8669690 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 110

Conread position: 1-487
Cow position: chrX:16565479-16564970 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 130

Conread position: 1-489
Cow position: chrX:2860195-2860701 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 124

Conread position: 1-489
Cow position: chrX:5284128-5284632 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 78

Conread position: 1-489
Cow position: chrX:5336967-5337484 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 342
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 116, 125

Conread position: 1-489
Cow position: chrX:7093205-7092700 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 338
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 12, 90

Conread position: 1-489
Cow position: chrX:8586696-8586190 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 40

Conread position: 1-489
Cow position: chrX:8963452-8963958 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 109

Conread position: 1-489
Cow position: chrX:13077088-13077596 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 116

Conread position: 1-489
Cow position: chrX:13097662-13098170 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 116

Conread position: 1-489
Cow position: chrX:17478919-17479429 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 123

Conread position: 1-490
Cow position: chrX:22777918-22777468 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 129

Conread position: 1-492
Cow position: chrX:21489837-21489328 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 111

Conread position: 1-492
Cow position: chrX:21586640-21586141 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 85

Conread position: 1-492
Cow position: chrX:22525998-22526512 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 123

Conread position: 1-492
Cow position: chrX:25332695-25332218 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 24

Conread position: 2-255
Cow position: chrX:17614798-17615043 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 168
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 236, 35

Conread position: 2-398
Cow position: chrX:11668834-11669218 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 2-402
Cow position: chrX:5299601-5299989 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 268
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 21, 10

Conread position: 2-407
Cow position: chrX:29882646-29883042 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 254
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 110, 43

Conread position: 2-439
Cow position: chrX:40057461-40057874 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 10

Conread position: 2-453
Cow position: chrX:11535087-11534656 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 10

Conread position: 2-453
Cow position: chrX:26628715-26629143 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 305
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 161, 10

Conread position: 2-468
Cow position: chrX:35017418-35016988 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 310
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 337, 61

Conread position: 2-474
Cow position: chrX:22131092-22131557 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 108

Conread position: 2-474
Cow position: chrX:31080136-31079681 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 104

Conread position: 2-478
Cow position: chrX:20796214-20795738 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 312
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 11, 125

Conread position: 2-482
Cow position: chrX:16017522-16017989 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 89

Conread position: 2-486
Cow position: chrX:21829127-21828663 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 10

Conread position: 2-486
Cow position: chrX:23455967-23456444 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 129

Conread position: 2-486
Cow position: chrX:41151830-41151352 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 128

Conread position: 2-488
Cow position: chrX:18532607-18532110 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 112

Conread position: 2-492
Cow position: chrX:24484807-24485321 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 14

Conread position: 3-472
Cow position: chrX:24139385-24139832 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 315
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 112, 45

Conread position: 3-476
Cow position: chrX:2142903-2142450 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 330
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 7, 72

Conread position: 3-492
Cow position: chrX:16236923-16236446 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 9

Conread position: 4-489
Cow position: chrX:2101462-2100961 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 107

Conread position: 4-489
Cow position: chrX:12804259-12804758 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 338
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 9, 91

Conread position: 6-154
Cow position: chrX:27494302-27494155 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 120, 108

Conread position: 7-226
Cow position: chrX:29950970-29951186 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 150, 5

Conread position: 7-247
Cow position: chrX:12478318-12478081 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 155, 122

Conread position: 7-454
Cow position: chrX:32466850-32466412 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 5

Conread position: 7-468
Cow position: chrX:13052270-13051835 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 122

Conread position: 7-489
Cow position: chrX:29174004-29174503 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 18

Conread position: 7-492
Cow position: chrX:1833432-1832966 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 100

Conread position: 7-492
Cow position: chrX:12671945-12672448 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 123

Conread position: 8-167
Cow position: chrX:10531963-10532122 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 115
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 157, 115

Conread position: 8-204
Cow position: chrX:29093100-29092903 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 153, 121

Conread position: 8-210
Cow position: chrX:23046741-23046540 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 109, 118

Conread position: 8-225
Cow position: chrX:8454351-8454138 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 157, 117

Conread position: 8-242
Cow position: chrX:7029786-7029550 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 92, 118

Conread position: 8-252
Cow position: chrX:30666343-30666585 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 109, 118

Conread position: 8-274
Cow position: chrX:12289346-12289604 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 157, 101

Conread position: 8-286
Cow position: chrX:30179397-30179664 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 150, 121

Conread position: 8-317
Cow position: chrX:6873474-6873791 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 87, 69

Conread position: 8-317
Cow position: chrX:7751494-7751192 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 223
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 157, 108

Conread position: 8-317
Cow position: chrX:18218992-18218687 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 222
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 157, 99

Conread position: 8-317
Cow position: chrX:20316460-20316766 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 24

Conread position: 8-429
Cow position: chrX:30056267-30055845 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 70

Conread position: 8-444
Cow position: chrX:21289892-21290304 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 8-458
Cow position: chrX:38145655-38145219 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 28

Conread position: 8-465
Cow position: chrX:18954919-18955388 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-466
Cow position: chrX:1546530-1546084 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 121

Conread position: 8-466
Cow position: chrX:15598525-15598080 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 119

Conread position: 8-468
Cow position: chrX:26758995-26759442 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-473
Cow position: chrX:970361-969922 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 87

Conread position: 8-473
Cow position: chrX:21222523-21222092 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 0

Conread position: 8-474
Cow position: chrX:19185353-19185796 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 82

Conread position: 8-486
Cow position: chrX:13413520-13413995 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 121

Conread position: 8-486
Cow position: chrX:23276714-23276247 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 17

Conread position: 8-486
Cow position: chrX:23392006-23392473 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chrX:25187255-25186789 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chrX:26527571-26527105 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chrX:28651527-28651973 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 82

Conread position: 8-486
Cow position: chrX:29853968-29854440 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-486
Cow position: chrX:32095363-32095821 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 108

Conread position: 8-487
Cow position: chrX:5862993-5862493 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-487
Cow position: chrX:12655158-12655651 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 333
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 157, 115

Conread position: 8-487
Cow position: chrX:13398518-13399017 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 106

Conread position: 8-487
Cow position: chrX:20360335-20360835 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 121

Conread position: 8-487
Cow position: chrX:24325550-24326048 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 330
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 157, 115

Conread position: 8-487
Cow position: chrX:28506343-28506842 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 115

Conread position: 8-488
Cow position: chrX:2603644-2603148 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 116

Conread position: 8-488
Cow position: chrX:9007937-9007443 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 81

Conread position: 8-488
Cow position: chrX:37848610-37848104 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 120

Conread position: 8-489
Cow position: chrX:3085306-3085805 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 122

Conread position: 8-489
Cow position: chrX:3421843-3422346 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 116

Conread position: 8-489
Cow position: chrX:5395367-5395869 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-489
Cow position: chrX:8479300-8478809 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 35

Conread position: 8-489
Cow position: chrX:9172771-9173271 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 118

Conread position: 8-489
Cow position: chrX:9193049-9193549 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 118

Conread position: 8-489
Cow position: chrX:12280660-12281160 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-489
Cow position: chrX:12341793-12341289 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 117

Conread position: 8-489
Cow position: chrX:15179834-15180342 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 10

Conread position: 8-489
Cow position: chrX:16363527-16364029 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-489
Cow position: chrX:21339997-21339496 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 87

Conread position: 8-489
Cow position: chrX:24380906-24380404 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 118

Conread position: 8-489
Cow position: chrX:27426721-27427224 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-489
Cow position: chrX:28759030-28759528 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 96

Conread position: 8-489
Cow position: chrX:31187638-31188140 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 116

Conread position: 8-489
Cow position: chrX:39521502-39521000 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 118

Conread position: 8-491
Cow position: chrX:24088998-24088495 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 115

Conread position: 8-492
Cow position: chrX:22487784-22487315 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 121

Conread position: 8-492
Cow position: chrX:22619719-22620211 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 92

Conread position: 8-492
Cow position: chrX:28522101-28522593 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 116

Conread position: 8-492
Cow position: chrX:29284332-29283856 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 121

Conread position: 8-492
Cow position: chrX:30710949-30710481 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 73

Conread position: 12-242
Cow position: chrX:17668692-17668926 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 114, 69

Conread position: 12-457
Cow position: chrX:30046523-30046947 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 115

Conread position: 12-464
Cow position: chrX:16698893-16698451 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 117

Conread position: 12-466
Cow position: chrX:15127651-15128090 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 117

Conread position: 12-486
Cow position: chrX:26767601-26768070 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 431, 107

Conread position: 12-488
Cow position: chrX:12704320-12704817 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 105

Conread position: 12-489
Cow position: chrX:3376632-3377125 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 66

Conread position: 12-489
Cow position: chrX:22610900-22610407 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 327
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 153, 18

Conread position: 12-489
Cow position: chrX:26400876-26401372 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 60

Conread position: 12-492
Cow position: chrX:29794531-29794979 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 80

Conread position: 13-474
Cow position: chrX:34988242-34987806 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 315
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 58, 198

Conread position: 15-311
Cow position: chrX:5324129-5324417 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 213
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 150, 34

Conread position: 15-317
Cow position: chrX:12182788-12182491 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 208
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 85, 115

Conread position: 16-470
Cow position: chrX:30232516-30232958 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 113

Conread position: 16-492
Cow position: chrX:14787285-14787763 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 88

Conread position: 20-260
Cow position: chrX:23041729-23041970 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 64, 101

Conread position: 27-317
Cow position: chrX:28562676-28562968 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 100, 12

Conread position: 27-372
Cow position: chrX:37757357-37757042 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 233
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 136, 58

Conread position: 27-455
Cow position: chrX:30369402-30369815 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 264
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 136, 79

Conread position: 27-489
Cow position: chrX:6577272-6576791 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 50

Conread position: 30-317
Cow position: chrX:15980910-15981198 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 87, 96

Conread position: 35-224
Cow position: chrX:27990204-27990396 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 75, 98

Conread position: 35-477
Cow position: chrX:9901028-9901472 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 95

Conread position: 35-489
Cow position: chrX:21304946-21305415 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 319
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 130, 81

Conread position: 44-477
Cow position: chrX:32430250-32429832 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 283
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 175

Conread position: 47-375
Cow position: chrX:22813959-22813631 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 74

Conread position: 53-468
Cow position: chrX:24376921-24376514 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 275
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 110, 44

Conread position: 53-489
Cow position: chrX:14051630-14051175 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 305
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 112, 77

Conread position: 65-424
Cow position: chrX:35020188-35019848 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 60

Conread position: 67-487
Cow position: chrX:30010492-30010053 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 288
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 98, 56

Conread position: 78-489
Cow position: chrX:979147-978712 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 287
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 42, 48

Conread position: 84-487
Cow position: chrX:28553543-28553149 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 46

Conread position: 91-492
Cow position: chrX:22583407-22583830 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 287
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 76, 39

Conread position: 97-492
Cow position: chrX:13031922-13032333 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 270
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 68, 36

Conread position: 131-476
Cow position: chrX:21316661-21316318 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 225
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 123

Conread position: 146-330
Cow position: chrX:27493878-27493696 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 62

Conread position: 146-486
Cow position: chrX:318546-318215 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 247
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 17, 62

Conread position: 183-489
Cow position: chrX:29934828-29934528 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 198
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 30

Conread position: 195-470
Cow position: chrX:17668995-17669257 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 32, 17

Conread position: 207-477
Cow position: chrX:31198032-31197775 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 8, 71

Conread position: 207-486
Cow position: chrX:30186051-30186320 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 187
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 24, 83

Conread position: 207-489
Cow position: chrX:8453847-8453563 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 188
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 35, 10

Conread position: 224-492
Cow position: chrX:27990629-27990898 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 185
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 13, 25

Conread position: 232-488
Cow position: chrX:28604698-28604939 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 152, 14

Conread position: 234-491
Cow position: chrX:30144119-30144373 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 241-455
Cow position: chrX:27984929-27985129 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 241-483
Cow position: chrX:30990565-30990807 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 184, 171

Conread position: 261-474
Cow position: chrX:31035048-31034837 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 123, 49

Conread position: 267-434
Cow position: chrX:6283875-6284041 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 100, 145

Conread position: 288-492
Cow position: chrX:31372281-31372081 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 7, 0

Conread position: 295-489
Cow position: chrX:30190093-30190285 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 149, 117

Conread position: 304-488
Cow position: chrX:6910421-6910604 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 142, 108

Conread position: 304-489
Cow position: chrX:37811675-37811492 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 305-489
Cow position: chrX:27972933-27973114 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 68, 14

Conread position: 312-490
Cow position: chrX:25041134-25041302 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 142
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 36, 0

Show alignments to all cow chromosomes.