Cow genome map
| Conread name: | Ss1.1-rpliv0124_d2.5 |
| Conread position: | 1-286 |
| Cow position: | chr13:39984579-39984864 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 220, 201 |
| Conread position: | 6-397 |
| Cow position: | chr13:39930576-39930967 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 7-397 |
| Cow position: | chr13:22124774-22125164 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 57 |
| Conread position: | 7-397 |
| Cow position: | chr13:22124858-22125248 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 214, 206 |
| Conread position: | 8-369 |
| Cow position: | chr13:22124691-22125052 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-356 |
| Cow position: | chr13:39930836-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 14-397 |
| Cow position: | chr13:39930668-39931051 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 14-397 |
| Cow position: | chr13:39930752-39931135 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 16-368 |
| Cow position: | chr13:39984258-39984610 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 278, 270 |
| Conread position: | 16-414 |
| Cow position: | chr13:39984174-39984572 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 41, 35 |
| Conread position: | 17-370 |
| Cow position: | chr13:39984511-39984864 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 34 |
| Conread position: | 17-414 |
| Cow position: | chr13:39984091-39984488 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 134, 127 |
| Conread position: | 17-414 |
| Cow position: | chr13:39984427-39984824 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 128, 137 |
| Conread position: | 55-396 |
| Cow position: | chr13:56292137-56291795 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 68-366 |
| Cow position: | chr13:56333622-56333920 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 235, 218 |
| Conread position: | 68-414 |
| Cow position: | chr13:39983974-39984320 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 79-414 |
| Cow position: | chr13:56292194-56291862 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.