Cow genome map

Conread name: Ss1.1-rpliv0124_d2.5

Conread position: 1-162
Cow position:
Alignm length: 162
Alignm identity: 119
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-265
Cow position:
Alignm length: 265
Alignm identity: 182
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 1-358
Cow position:
Alignm length: 360
Alignm identity: 221
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 129, 117

Conread position: 1-369
Cow position:
Alignm length: 370
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 45

Conread position: 1-396
Cow position:
Alignm length: 397
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 296

Conread position: 1-397
Cow position:
Alignm length: 397
Alignm identity: 244
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 175, 0

Conread position: 1-414
Cow position:
Alignm length: 415
Alignm identity: 249
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 246, 0

Conread position: 1-414
Cow position:
Alignm length: 417
Alignm identity: 263
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 39, 22

Conread position: 1-414
Cow position:
Alignm length: 414
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-414
Cow position:
Alignm length: 416
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 144

Conread position: 1-414
Cow position:
Alignm length: 414
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-414
Cow position:
Alignm length: 415
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 399, 394

Conread position: 1-414
Cow position:
Alignm length: 415
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 62

Conread position: 1-414
Cow position:
Alignm length: 414
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-419
Cow position:
Alignm length: 423
Alignm identity: 272
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 40, 23

Conread position: 1-423
Cow position:
Alignm length: 426
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 211

Conread position: 1-427
Cow position:
Alignm length: 428
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 392, 384

Conread position: 2-357
Cow position:
Alignm length: 359
Alignm identity: 234
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 45, 51

Conread position: 2-368
Cow position:
Alignm length: 367
Alignm identity: 223
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 2-368
Cow position:
Alignm length: 368
Alignm identity: 223
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 139, 128

Conread position: 2-378
Cow position:
Alignm length: 378
Alignm identity: 243
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 222, 188

Conread position: 2-380
Cow position:
Alignm length: 381
Alignm identity: 247
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 55, 48

Conread position: 2-397
Cow position:
Alignm length: 396
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-400
Cow position:
Alignm length: 399
Alignm identity: 250
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 2-411
Cow position:
Alignm length: 410
Alignm identity: 250
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position:
Alignm length: 414
Alignm identity: 265
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 127, 139

Conread position: 2-414
Cow position:
Alignm length: 415
Alignm identity: 266
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 146, 141

Conread position: 2-414
Cow position:
Alignm length: 414
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 203

Conread position: 2-414
Cow position:
Alignm length: 414
Alignm identity: 251
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 204, 212

Conread position: 2-414
Cow position:
Alignm length: 416
Alignm identity: 246
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 271, 291

Conread position: 2-414
Cow position:
Alignm length: 413
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position:
Alignm length: 413
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position:
Alignm length: 413
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position:
Alignm length: 413
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position:
Alignm length: 414
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 150

Conread position: 2-414
Cow position:
Alignm length: 414
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 138

Conread position: 2-414
Cow position:
Alignm length: 413
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position:
Alignm length: 414
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 134

Conread position: 2-414
Cow position:
Alignm length: 414
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 134

Conread position: 2-414
Cow position:
Alignm length: 414
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 391

Conread position: 2-419
Cow position:
Alignm length: 420
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 68

Conread position: 2-419
Cow position:
Alignm length: 420
Alignm identity: 255
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 134, 118

Conread position: 2-426
Cow position:
Alignm length: 425
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-427
Cow position:
Alignm length: 427
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 391

Conread position: 2-732
Cow position:
Alignm length: 731
Alignm identity: 627
Alignm E-value: 0
Alignm gaps (pig, cow): 543, 0

Conread position: 3-411
Cow position:
Alignm length: 410
Alignm identity: 247
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 326, 0

Conread position: 3-411
Cow position:
Alignm length: 411
Alignm identity: 251
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 191, 207

Conread position: 3-414
Cow position:
Alignm length: 412
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 4-414
Cow position:
Alignm length: 413
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 365

Conread position: 6-369
Cow position:
Alignm length: 366
Alignm identity: 234
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 219, 212

Conread position: 6-378
Cow position:
Alignm length: 375
Alignm identity: 248
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 49, 41

Conread position: 6-413
Cow position:
Alignm length: 409
Alignm identity: 254
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 50, 41

Conread position: 6-414
Cow position:
Alignm length: 410
Alignm identity: 256
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 218, 206

Conread position: 6-414
Cow position:
Alignm length: 409
Alignm identity: 253
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 6-414
Cow position:
Alignm length: 409
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-414
Cow position:
Alignm length: 409
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-414
Cow position:
Alignm length: 409
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-415
Cow position:
Alignm length: 411
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 303

Conread position: 6-427
Cow position:
Alignm length: 423
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 40

Conread position: 7-200
Cow position:
Alignm length: 194
Alignm identity: 139
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 7-387
Cow position:
Alignm length: 382
Alignm identity: 247
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 62, 56

Conread position: 7-414
Cow position:
Alignm length: 408
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-414
Cow position:
Alignm length: 409
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 378

Conread position: 7-414
Cow position:
Alignm length: 411
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 6

Conread position: 7-414
Cow position:
Alignm length: 409
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 122

Conread position: 7-427
Cow position:
Alignm length: 424
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 37

Conread position: 7-427
Cow position:
Alignm length: 422
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 372, 378

Conread position: 8-202
Cow position:
Alignm length: 195
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 8-349
Cow position:
Alignm length: 343
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 38

Conread position: 8-396
Cow position:
Alignm length: 389
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-405
Cow position:
Alignm length: 398
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-412
Cow position:
Alignm length: 406
Alignm identity: 257
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 206, 197

Conread position: 8-414
Cow position:
Alignm length: 409
Alignm identity: 244
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 100, 133

Conread position: 8-414
Cow position:
Alignm length: 407
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-414
Cow position:
Alignm length: 409
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 132

Conread position: 8-414
Cow position:
Alignm length: 407
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-414
Cow position:
Alignm length: 407
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-414
Cow position:
Alignm length: 407
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-414
Cow position:
Alignm length: 407
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-414
Cow position:
Alignm length: 407
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-414
Cow position:
Alignm length: 408
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 28

Conread position: 8-415
Cow position:
Alignm length: 409
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 120

Conread position: 8-415
Cow position:
Alignm length: 409
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 120

Conread position: 13-321
Cow position:
Alignm length: 312
Alignm identity: 196
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 43, 31

Conread position: 14-344
Cow position:
Alignm length: 333
Alignm identity: 210
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 127, 75

Conread position: 14-368
Cow position:
Alignm length: 357
Alignm identity: 230
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 43, 30

Conread position: 14-369
Cow position:
Alignm length: 358
Alignm identity: 232
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 116, 136

Conread position: 14-379
Cow position:
Alignm length: 366
Alignm identity: 236
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 14-380
Cow position:
Alignm length: 368
Alignm identity: 237
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 42, 30

Conread position: 14-391
Cow position:
Alignm length: 380
Alignm identity: 230
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 339, 334

Conread position: 14-397
Cow position:
Alignm length: 385
Alignm identity: 250
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 43, 31

Conread position: 14-405
Cow position:
Alignm length: 392
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-407
Cow position:
Alignm length: 396
Alignm identity: 246
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 43, 33

Conread position: 14-411
Cow position:
Alignm length: 400
Alignm identity: 258
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 43, 30

Conread position: 14-414
Cow position:
Alignm length: 404
Alignm identity: 259
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 33, 46

Conread position: 14-414
Cow position:
Alignm length: 402
Alignm identity: 260
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 39, 29

Conread position: 14-414
Cow position:
Alignm length: 402
Alignm identity: 248
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 43, 36

Conread position: 14-414
Cow position:
Alignm length: 404
Alignm identity: 246
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 274, 295

Conread position: 14-414
Cow position:
Alignm length: 402
Alignm identity: 260
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 43, 30

Conread position: 14-414
Cow position:
Alignm length: 401
Alignm identity: 244
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 14-414
Cow position:
Alignm length: 403
Alignm identity: 255
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 18, 12

Conread position: 14-414
Cow position:
Alignm length: 401
Alignm identity: 257
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 14-414
Cow position:
Alignm length: 401
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-414
Cow position:
Alignm length: 401
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-414
Cow position:
Alignm length: 403
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 56

Conread position: 14-414
Cow position:
Alignm length: 401
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-414
Cow position:
Alignm length: 403
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 203

Conread position: 14-422
Cow position:
Alignm length: 413
Alignm identity: 256
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 39, 30

Conread position: 14-427
Cow position:
Alignm length: 415
Alignm identity: 261
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 42, 30

Conread position: 15-411
Cow position:
Alignm length: 398
Alignm identity: 253
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 107, 101

Conread position: 16-371
Cow position:
Alignm length: 358
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 134

Conread position: 16-411
Cow position:
Alignm length: 397
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 112

Conread position: 17-378
Cow position:
Alignm length: 362
Alignm identity: 235
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 17-414
Cow position:
Alignm length: 399
Alignm identity: 253
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 197, 188

Conread position: 17-414
Cow position:
Alignm length: 398
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-414
Cow position:
Alignm length: 398
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 17-414
Cow position:
Alignm length: 398
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 23-414
Cow position:
Alignm length: 392
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 39-405
Cow position:
Alignm length: 368
Alignm identity: 234
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 339, 90

Conread position: 48-368
Cow position:
Alignm length: 321
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 55-414
Cow position:
Alignm length: 362
Alignm identity: 220
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 96, 79

Conread position: 56-380
Cow position:
Alignm length: 326
Alignm identity: 201
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 243, 249

Conread position: 56-414
Cow position:
Alignm length: 360
Alignm identity: 218
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 13, 6

Conread position: 56-414
Cow position:
Alignm length: 360
Alignm identity: 238
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 107, 121

Conread position: 67-414
Cow position:
Alignm length: 349
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 322

Conread position: 68-386
Cow position:
Alignm length: 320
Alignm identity: 217
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 57, 44

Conread position: 68-414
Cow position:
Alignm length: 348
Alignm identity: 233
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 310, 302

Conread position: 74-369
Cow position:
Alignm length: 296
Alignm identity: 196
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 91-414
Cow position:
Alignm length: 324
Alignm identity: 206
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 211, 0

Conread position: 95-414
Cow position:
Alignm length: 321
Alignm identity: 206
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 292, 297

Conread position: 149-397
Cow position:
Alignm length: 249
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 152-405
Cow position:
Alignm length: 255
Alignm identity: 162
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 50

Conread position: 152-414
Cow position:
Alignm length: 265
Alignm identity: 174
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 60, 74

Conread position: 152-427
Cow position:
Alignm length: 276
Alignm identity: 171
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 158-405
Cow position:
Alignm length: 248
Alignm identity: 161
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 158-419
Cow position:
Alignm length: 262
Alignm identity: 173
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 258, 0

Conread position: 160-414
Cow position:
Alignm length: 257
Alignm identity: 171
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 35

Conread position: 162-414
Cow position:
Alignm length: 253
Alignm identity: 165
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 167-419
Cow position:
Alignm length: 253
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 249, 0

Show alignments to all cow chromosomes.