Cow genome map
| Conread name: | Ss1.1-rpliv0124_d2.5 |
| Conread position: | 1-369 |
| Cow position: | chr17:22590176-22589808 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 119, 136 |
| Conread position: | 1-400 |
| Cow position: | chr17:22589924-22589525 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-406 |
| Cow position: | chr17:22499301-22498896 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 223, 216 |
| Conread position: | 1-414 |
| Cow position: | chr17:22473344-22473757 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 1-414 |
| Cow position: | chr17:22552842-22552429 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 264 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-356 |
| Cow position: | chr17:22473597-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 151, 142 |
| Conread position: | 2-365 |
| Cow position: | chr17:22589755-22589392 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 136, 114 |
| Conread position: | 2-414 |
| Cow position: | chr17:22452370-22451958 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 118, 110 |
| Conread position: | 2-414 |
| Cow position: | chr17:22473429-22473841 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 204, 200 |
| Conread position: | 2-414 |
| Cow position: | chr17:22499132-22498720 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 2-414 |
| Cow position: | chr17:22589671-22589259 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-418 |
| Cow position: | chr17:22452202-22451786 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 271 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 3-414 |
| Cow position: | chr17:22499215-22498804 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 132, 138 |
| Conread position: | 6-359 |
| Cow position: | chr17:22452030-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 208, 198 |
| Conread position: | 7-414 |
| Cow position: | chr17:22499045-22498636 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 13-414 |
| Cow position: | chr17:22552662-22552261 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-345 |
| Cow position: | chr17:22551821-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 14-366 |
| Cow position: | chr17:22552745-22552393 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-378 |
| Cow position: | chr17:22499372-22499008 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 137, 132 |
| Conread position: | 14-396 |
| Cow position: | chr17:22589827-22589445 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 22, 28 |
| Conread position: | 14-397 |
| Cow position: | chr17:22552073-22551690 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-397 |
| Cow position: | chr17:22552493-22552110 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 139, 132 |
| Conread position: | 14-400 |
| Cow position: | chr17:22498952-22498566 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 14-411 |
| Cow position: | chr17:22590079-22589682 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-411 |
| Cow position: | chr17:22590247-22589850 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-414 |
| Cow position: | chr17:22452106-22451706 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 14-414 |
| Cow position: | chr17:22551989-22551589 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-414 |
| Cow position: | chr17:22552241-22551841 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 14-414 |
| Cow position: | chr17:22552577-22552177 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 374, 379 |
| Conread position: | 14-414 |
| Cow position: | chr17:22553081-22552681 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 14-414 |
| Cow position: | chr17:22589995-22589595 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-414 |
| Cow position: | chr17:22452273-22451874 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 15-414 |
| Cow position: | chr17:22473274-22473673 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-414 |
| Cow position: | chr17:22552324-22551925 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-414 |
| Cow position: | chr17:22552408-22552009 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-414 |
| Cow position: | chr17:22552912-22552513 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 41-396 |
| Cow position: | chr17:22552970-22552615 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-367 |
| Cow position: | chr17:22551863-22551552 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-411 |
| Cow position: | chr17:22452400-22452045 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 148, 135 |
| Conread position: | 57-388 |
| Cow position: | chr17:22553122-22552791 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 68-395 |
| Cow position: | chr17:22589521-22589194 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 131, 143 |
| Conread position: | 76-411 |
| Cow position: | chr17:22590269-22589934 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 77-405 |
| Cow position: | chr17:22499393-22499065 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 161-414 |
| Cow position: | chr17:22499393-22499140 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 213-414 |
| Cow position: | chr17:22452411-22452210 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 160, 144 |
Show alignments to all cow chromosomes.