Cow genome map

Conread name: Ss1.1-rpliv0124_d2.5

Conread position: 1-360
Cow position:
Alignm length: 361
Alignm identity: 229
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 224, 217

Conread position: 1-372
Cow position:
Alignm length: 374
Alignm identity: 234
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 206, 201

Conread position: 1-396
Cow position:
Alignm length: 396
Alignm identity: 250
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 1-410
Cow position:
Alignm length: 411
Alignm identity: 255
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 220, 215

Conread position: 1-414
Cow position:
Alignm length: 415
Alignm identity: 258
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 223, 216

Conread position: 1-419
Cow position:
Alignm length: 419
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 0

Conread position: 1-428
Cow position:
Alignm length: 429
Alignm identity: 270
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 147, 131

Conread position: 2-331
Cow position:
Alignm length: 330
Alignm identity: 207
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 2-354
Cow position:
Alignm length: 354
Alignm identity: 225
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 54, 47

Conread position: 2-366
Cow position:
Alignm length: 367
Alignm identity: 240
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 40, 32

Conread position: 2-366
Cow position:
Alignm length: 366
Alignm identity: 228
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 127, 139

Conread position: 2-367
Cow position:
Alignm length: 369
Alignm identity: 238
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 33, 67

Conread position: 2-373
Cow position:
Alignm length: 373
Alignm identity: 240
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 365, 338

Conread position: 2-394
Cow position:
Alignm length: 393
Alignm identity: 243
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 2-396
Cow position:
Alignm length: 397
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 45

Conread position: 2-410
Cow position:
Alignm length: 411
Alignm identity: 263
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 54, 49

Conread position: 2-411
Cow position:
Alignm length: 414
Alignm identity: 271
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 188, 196

Conread position: 2-411
Cow position:
Alignm length: 410
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-413
Cow position:
Alignm length: 413
Alignm identity: 247
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 46

Conread position: 2-413
Cow position:
Alignm length: 413
Alignm identity: 247
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 119, 136

Conread position: 2-414
Cow position:
Alignm length: 413
Alignm identity: 261
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position:
Alignm length: 416
Alignm identity: 269
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 48, 67

Conread position: 2-414
Cow position:
Alignm length: 413
Alignm identity: 265
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 216, 0

Conread position: 2-414
Cow position:
Alignm length: 414
Alignm identity: 262
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 235, 226

Conread position: 2-414
Cow position:
Alignm length: 413
Alignm identity: 247
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position:
Alignm length: 416
Alignm identity: 266
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 149, 142

Conread position: 2-414
Cow position:
Alignm length: 414
Alignm identity: 258
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 146, 141

Conread position: 2-414
Cow position:
Alignm length: 413
Alignm identity: 249
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position:
Alignm length: 413
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position:
Alignm length: 415
Alignm identity: 252
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 30, 21

Conread position: 2-414
Cow position:
Alignm length: 414
Alignm identity: 264
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 49, 56

Conread position: 2-414
Cow position:
Alignm length: 413
Alignm identity: 254
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position:
Alignm length: 414
Alignm identity: 254
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 41, 32

Conread position: 2-414
Cow position:
Alignm length: 416
Alignm identity: 267
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 208, 201

Conread position: 2-414
Cow position:
Alignm length: 413
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-418
Cow position:
Alignm length: 418
Alignm identity: 257
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 55, 48

Conread position: 6-367
Cow position:
Alignm length: 362
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-398
Cow position:
Alignm length: 394
Alignm identity: 238
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 308, 296

Conread position: 7-414
Cow position:
Alignm length: 409
Alignm identity: 249
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 41, 37

Conread position: 8-414
Cow position:
Alignm length: 408
Alignm identity: 246
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 119, 67

Conread position: 13-410
Cow position:
Alignm length: 400
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 204

Conread position: 13-414
Cow position:
Alignm length: 402
Alignm identity: 256
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 14-369
Cow position:
Alignm length: 357
Alignm identity: 223
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 43, 36

Conread position: 14-370
Cow position:
Alignm length: 359
Alignm identity: 223
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 37, 22

Conread position: 14-376
Cow position:
Alignm length: 365
Alignm identity: 230
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 90, 97

Conread position: 14-378
Cow position:
Alignm length: 366
Alignm identity: 234
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 270, 53

Conread position: 14-396
Cow position:
Alignm length: 384
Alignm identity: 246
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 137, 129

Conread position: 14-396
Cow position:
Alignm length: 383
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-405
Cow position:
Alignm length: 392
Alignm identity: 245
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 14-411
Cow position:
Alignm length: 401
Alignm identity: 256
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 112, 102

Conread position: 14-414
Cow position:
Alignm length: 404
Alignm identity: 260
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 42, 36

Conread position: 14-414
Cow position:
Alignm length: 401
Alignm identity: 255
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 14-414
Cow position:
Alignm length: 401
Alignm identity: 245
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 14-414
Cow position:
Alignm length: 402
Alignm identity: 246
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 339, 334

Conread position: 14-414
Cow position:
Alignm length: 403
Alignm identity: 244
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 33

Conread position: 14-418
Cow position:
Alignm length: 406
Alignm identity: 261
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 294, 37

Conread position: 15-426
Cow position:
Alignm length: 413
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 119

Conread position: 17-345
Cow position:
Alignm length: 332
Alignm identity: 208
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 314, 0

Conread position: 17-370
Cow position:
Alignm length: 354
Alignm identity: 221
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 37, 0

Conread position: 17-414
Cow position:
Alignm length: 398
Alignm identity: 248
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 17-414
Cow position:
Alignm length: 400
Alignm identity: 246
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 39, 28

Conread position: 19-366
Cow position:
Alignm length: 350
Alignm identity: 222
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 106, 97

Conread position: 47-414
Cow position:
Alignm length: 368
Alignm identity: 233
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 68-335
Cow position:
Alignm length: 270
Alignm identity: 173
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 77, 86

Conread position: 74-414
Cow position:
Alignm length: 341
Alignm identity: 219
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 78-414
Cow position:
Alignm length: 337
Alignm identity: 221
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 224, 0

Conread position: 152-414
Cow position:
Alignm length: 263
Alignm identity: 174
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 152-414
Cow position:
Alignm length: 263
Alignm identity: 165
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 156-406
Cow position:
Alignm length: 251
Alignm identity: 167
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 160-409
Cow position:
Alignm length: 253
Alignm identity: 169
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 58

Show alignments to all cow chromosomes.