Cow genome map
| Conread name: | Ss1.1-rpliv0124_d2.5 |
| Conread position: | 1-360 |
| Cow position: | chr19:23649817-23650176 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 224, 217 |
| Conread position: | 1-372 |
| Cow position: | chr19:20677794-20678165 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 206, 201 |
| Conread position: | 1-396 |
| Cow position: | chr19:23614703-23615098 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-410 |
| Cow position: | chr19:23613863-23614272 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 220, 215 |
| Conread position: | 1-414 |
| Cow position: | chr19:14940335-14940748 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 223, 216 |
| Conread position: | 1-419 |
| Cow position: | chr19:23614535-23614952 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 0 |
| Conread position: | 1-428 |
| Cow position: | chr19:14960296-14959871 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 147, 131 |
| Conread position: | 2-331 |
| Cow position: | chr19:14940756-14941085 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-354 |
| Cow position: | chr19:14940504-14940856 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 2-366 |
| Cow position: | chr19:20678299-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 2-366 |
| Cow position: | chr19:20678383-20678744 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 127, 139 |
| Conread position: | 2-367 |
| Cow position: | chr19:20677711-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 2-373 |
| Cow position: | chr19:23597377-23597748 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 365, 338 |
| Conread position: | 2-394 |
| Cow position: | chr19:23613612-23614004 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-396 |
| Cow position: | chr19:23614284-23614678 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 2-410 |
| Cow position: | chr19:23613444-23613852 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 54, 49 |
| Conread position: | 2-411 |
| Cow position: | chr19:14960129-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 271 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 188, 196 |
| Conread position: | 2-411 |
| Cow position: | chr19:23597125-23597534 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-413 |
| Cow position: | chr19:23614032-23614443 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 2-413 |
| Cow position: | chr19:23650070-23650481 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 119, 136 |
| Conread position: | 2-414 |
| Cow position: | chr19:14940252-14940664 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr19:14940588-14941000 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 269 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 2-414 |
| Cow position: | chr19:14960379-14959969 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 265 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 2-414 |
| Cow position: | chr19:20635537-20635125 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 262 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 235, 226 |
| Conread position: | 2-414 |
| Cow position: | chr19:20635621-20635209 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr19:20677459-20677871 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 149, 142 |
| Conread position: | 2-414 |
| Cow position: | chr19:20678047-20678459 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 146, 141 |
| Conread position: | 2-414 |
| Cow position: | chr19:20678215-20678627 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr19:23597209-23597621 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr19:23613528-23613940 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 2-414 |
| Cow position: | chr19:23613696-23614108 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 264 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 2-414 |
| Cow position: | chr19:23614116-23614528 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr19:23614200-23614612 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 2-414 |
| Cow position: | chr19:23614620-23615032 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 267 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 208, 201 |
| Conread position: | 2-414 |
| Cow position: | chr19:23649314-23649726 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-418 |
| Cow position: | chr19:14959230-14958820 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 6-367 |
| Cow position: | chr19:23649570-23649931 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-398 |
| Cow position: | chr19:43570040-43569652 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 308, 296 |
| Conread position: | 7-414 |
| Cow position: | chr19:23613953-23614360 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 41, 37 |
| Conread position: | 8-414 |
| Cow position: | chr19:23596966-23597369 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 119, 67 |
| Conread position: | 13-410 |
| Cow position: | chr19:14940011-14940408 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 204 |
| Conread position: | 13-414 |
| Cow position: | chr19:14940095-14940496 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-369 |
| Cow position: | chr19:14948359-14948004 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 14-370 |
| Cow position: | chr19:20677555-20677911 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 14-376 |
| Cow position: | chr19:23649746-23650108 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 90, 97 |
| Conread position: | 14-378 |
| Cow position: | chr19:14960199-14959837 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 270, 53 |
| Conread position: | 14-396 |
| Cow position: | chr19:23597053-23597435 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 137, 129 |
| Conread position: | 14-396 |
| Cow position: | chr19:23597305-23597687 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-405 |
| Cow position: | chr19:14940684-14941075 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-411 |
| Cow position: | chr19:20635441-20635044 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 112, 102 |
| Conread position: | 14-414 |
| Cow position: | chr19:14940180-14940580 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 14-414 |
| Cow position: | chr19:14940432-14940832 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-414 |
| Cow position: | chr19:23613792-23614192 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-414 |
| Cow position: | chr19:23649662-23650062 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 339, 334 |
| Conread position: | 14-414 |
| Cow position: | chr19:43570200-43569800 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 14-418 |
| Cow position: | chr19:14948442-14948039 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 294, 37 |
| Conread position: | 15-426 |
| Cow position: | chr19:23649495-23649906 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 119 |
| Conread position: | 17-345 |
| Cow position: | chr19:23650169-23650500 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 314, 0 |
| Conread position: | 17-370 |
| Cow position: | chr19:43570278-43569928 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 17-414 |
| Cow position: | chr19:23614467-23614864 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-414 |
| Cow position: | chr19:23650001-23650398 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 19-366 |
| Cow position: | chr19:20635688-20635341 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 106, 97 |
| Conread position: | 47-414 |
| Cow position: | chr19:23614413-23614780 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 68-335 |
| Cow position: | chr19:14959575-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 77, 86 |
| Conread position: | 74-414 |
| Cow position: | chr19:14939988-14940328 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 78-414 |
| Cow position: | chr19:14960387-14960053 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 224, 0 |
| Conread position: | 152-414 |
| Cow position: | chr19:14959575-14959313 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 152-414 |
| Cow position: | chr19:20635639-20635377 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-406 |
| Cow position: | chr19:14960477-14960227 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 160-409 |
| Cow position: | chr19:23613350-23613599 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 58 |
Show alignments to all cow chromosomes.