Cow genome map

Conread name: Ss1.1-rpliv0124_d2.5

Conread position: 1-333
Cow position: chr22:12475624-12475292 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 221
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 307, 295

Conread position: 1-368
Cow position: chr22:14429907-14430274 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 224
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 152, 142

Conread position: 1-414
Cow position: chr22:12399667-12399254 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 267
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 190, 209

Conread position: 1-414
Cow position: chr22:12399751-12399338 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 263
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 34, 41

Conread position: 1-414
Cow position: chr22:12431227-12430814 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 44

Conread position: 1-414
Cow position: chr22:12431899-12431486 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 255
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 56, 44

Conread position: 1-414
Cow position: chr22:12476044-12475631 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 36

Conread position: 1-414
Cow position: chr22:12476128-12475715 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 264
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 1-414
Cow position: chr22:12476296-12475883 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 262
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 1-414
Cow position: chr22:12498963-12499376 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 264
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 1-414
Cow position: chr22:12499131-12499544 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 260
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 1-414
Cow position: chr22:12499467-12499880 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 17

Conread position: 1-414
Cow position: chr22:46654022-46654435 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 261
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 56, 44

Conread position: 1-418
Cow position: chr22:12418850-12418434 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 258
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 406, 0

Conread position: 1-427
Cow position: chr22:12498879-12499305 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 216

Conread position: 2-252
Cow position: chr22:11641204-11641454 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 164
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 44

Conread position: 2-330
Cow position: chr22:12430890-12430562 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 200
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 2-331
Cow position: chr22:12385236-12384907 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 212
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 55, 44

Conread position: 2-334
Cow position: chr22:12458094-12457762 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 208
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 46

Conread position: 2-360
Cow position: chr22:12432318-12431960 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 301

Conread position: 2-360
Cow position: chr22:12432486-12432128 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 236
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 2-366
Cow position: chr22:12399414-12399050 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 235
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 202, 193

Conread position: 2-367
Cow position: chr22:12399246-12398881 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 234
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 121, 139

Conread position: 2-368
Cow position: chr22:14468069-14468435 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 230
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 52, 45

Conread position: 2-369
Cow position: chr22:14429992-14430359 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 227
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 151, 141

Conread position: 2-371
Cow position: chr22:14430160-14430529 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 232
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 55, 40

Conread position: 2-372
Cow position: chr22:14467985-14468355 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 221
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 2-383
Cow position: chr22:14429824-14430203 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 14, 10

Conread position: 2-405
Cow position: chr22:12458598-12458195 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-406
Cow position: chr22:12419017-12418613 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 258
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 52, 42

Conread position: 2-410
Cow position: chr22:11701279-11701687 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 265
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 55, 42

Conread position: 2-414
Cow position: chr22:11640616-11641028 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 262
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 132, 139

Conread position: 2-414
Cow position: chr22:12385320-12384908 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 256
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position: chr22:12399330-12398918 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 259
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 117, 108

Conread position: 2-414
Cow position: chr22:12431478-12431066 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 43

Conread position: 2-414
Cow position: chr22:12431646-12431234 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 275
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 55, 41

Conread position: 2-414
Cow position: chr22:12431730-12431318 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 263
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 143, 149

Conread position: 2-414
Cow position: chr22:12431982-12431570 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 257
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position: chr22:12432066-12431654 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 253
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 55, 41

Conread position: 2-414
Cow position: chr22:12458346-12457934 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 252
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position: chr22:12458514-12458102 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 260
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 2-427
Cow position: chr22:12476379-12475954 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 216

Conread position: 3-373
Cow position: chr22:14430077-14430447 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 221
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 49, 66

Conread position: 6-400
Cow position: chr22:12458174-12457780 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 251
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 37, 22

Conread position: 6-414
Cow position: chr22:11640956-11641364 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 50

Conread position: 6-414
Cow position: chr22:12475871-12475463 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 135

Conread position: 6-414
Cow position: chr22:12475955-12475547 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-414
Cow position: chr22:12499304-12499712 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 134

Conread position: 7-333
Cow position: chr22:11701368-11701694 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 216
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 50, 37

Conread position: 8-406
Cow position: chr22:12431808-12431410 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 254
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 46, 37

Conread position: 8-410
Cow position: chr22:14430502-14430904 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 253
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 43, 32

Conread position: 8-414
Cow position: chr22:12385568-12385160 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 250
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 98, 119

Conread position: 8-414
Cow position: chr22:12399828-12399422 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 255
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 8-414
Cow position: chr22:12399906-12399506 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 263
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 49, 39

Conread position: 8-414
Cow position: chr22:12431388-12430982 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-414
Cow position: chr22:11640711-11641112 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 45

Conread position: 13-414
Cow position: chr22:11666468-11666869 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 254
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 105, 123

Conread position: 13-414
Cow position: chr22:11701122-11701523 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 253
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 104, 112

Conread position: 14-333
Cow position: chr22:12499648-12499967 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 294, 282

Conread position: 14-336
Cow position: chr22:11641132-11641454 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 208
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 196, 201

Conread position: 14-339
Cow position: chr22:12418753-12418428 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 200
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 14-360
Cow position: chr22:12431130-12430784 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 193

Conread position: 14-369
Cow position: chr22:12458250-12457895 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 233
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 113, 98

Conread position: 14-397
Cow position: chr22:11641048-11641431 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 137

Conread position: 14-397
Cow position: chr22:11666553-11666936 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 245
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 40, 28

Conread position: 14-400
Cow position: chr22:12499564-12499950 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 247
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 43, 27

Conread position: 14-406
Cow position: chr22:12458418-12458026 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 244
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 14-414
Cow position: chr22:11640796-11641196 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 251
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 14-414
Cow position: chr22:12418921-12418521 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-414
Cow position: chr22:12475695-12475295 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 258
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 43, 27

Conread position: 14-414
Cow position: chr22:12475779-12475379 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 111

Conread position: 14-414
Cow position: chr22:12499228-12499628 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 27

Conread position: 14-415
Cow position: chr22:12385646-12385243 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 260
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 181, 211

Conread position: 15-410
Cow position: chr22:12419189-12418777 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 233
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 161, 0

Conread position: 15-414
Cow position: chr22:46654204-46654603 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 252
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 48, 30

Conread position: 16-368
Cow position: chr22:46654121-46654473 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 229
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 106, 136

Conread position: 16-385
Cow position: chr22:46654289-46654658 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 237
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 106, 136

Conread position: 16-405
Cow position: chr22:46654457-46654846 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 231
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 42, 28

Conread position: 16-414
Cow position: chr22:12419272-12418857 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 244
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 242, 0

Conread position: 17-346
Cow position: chr22:14430595-14430924 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 217
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 16, 32

Conread position: 17-414
Cow position: chr22:12399567-12399170 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 264
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 40, 33

Conread position: 47-409
Cow position: chr22:12430929-12430567 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 227
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 142, 167

Conread position: 56-367
Cow position: chr22:14430298-14430609 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 202
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 92, 87

Conread position: 56-414
Cow position: chr22:12385688-12385328 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 226
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 24, 18

Conread position: 56-414
Cow position: chr22:12399444-12399086 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 232
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 85, 78

Conread position: 56-414
Cow position: chr22:12476157-12475799 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 230
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 57-284
Cow position: chr22:12419315-12419088 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 149
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 57-414
Cow position: chr22:12458627-12458270 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 230
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 68-368
Cow position: chr22:46654005-46654305 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 191
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 83, 78

Conread position: 68-414
Cow position: chr22:14430478-14430824 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 212
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 80, 76

Conread position: 69-367
Cow position: chr22:12385337-12385039 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 200
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 52, 71

Conread position: 70-385
Cow position: chr22:14429640-14429955 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 202
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 81, 74

Conread position: 73-414
Cow position: chr22:12432499-12432158 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 74-378
Cow position: chr22:12385416-12385112 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 195
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 74-400
Cow position: chr22:12476391-12476065 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 204
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 74-414
Cow position: chr22:12498868-12499208 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 213
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 80-406
Cow position: chr22:12419023-12418697 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 214
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 130-376
Cow position: chr22:14467945-14468191 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 161
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 29

Conread position: 140-414
Cow position: chr22:12476409-12476135 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 178
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 140-414
Cow position: chr22:12498850-12499124 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 178
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 151-380
Cow position: chr22:12419305-12419076 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 151
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 235-411
Cow position: chr22:12419305-12419129 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.