Cow genome map


           Conread name:
           Ss1.1-rpliv0124_d2.5
        

               Conread position:
               1-333
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               307, 295
               

               Conread position:
               1-368
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               152, 142
               

               Conread position:
               1-414
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               190, 209
               

               Conread position:
               1-414
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               263
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               34, 41
               

               Conread position:
               1-414
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 44
               

               Conread position:
               1-414
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               255
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               56, 44
               

               Conread position:
               1-414
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 36
               

               Conread position:
               1-414
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               264
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-414
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               262
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-414
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               264
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-414
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               260
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-414
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 17
               

               Conread position:
               1-414
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               261
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               56, 44
               

               Conread position:
               1-418
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               406, 0
               

               Conread position:
               1-427
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 216
               

               Conread position:
               2-252
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               52, 44
               

               Conread position:
               2-330
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-331
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               212
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               55, 44
               

               Conread position:
               2-334
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               38, 46
               

               Conread position:
               2-360
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               307, 301
               

               Conread position:
               2-360
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               236
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-366
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               202, 193
               

               Conread position:
               2-367
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               121, 139
               

               Conread position:
               2-368
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               230
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               52, 45
               

               Conread position:
               2-369
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               227
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               151, 141
               

               Conread position:
               2-371
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               232
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               55, 40
               

               Conread position:
               2-372
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-383
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               247
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               14, 10
               

               Conread position:
               2-405
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-406
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               258
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               52, 42
               

               Conread position:
               2-410
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               265
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               55, 42
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               262
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               132, 139
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               256
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               259
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               117, 108
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 43
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               275
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               55, 41
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               263
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               143, 149
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               257
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               55, 41
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               252
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               260
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-427
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 216
               

               Conread position:
               3-373
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               49, 66
               

               Conread position:
               6-400
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               37, 22
               

               Conread position:
               6-414
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 50
               

               Conread position:
               6-414
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 135
               

               Conread position:
               6-414
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-414
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 134
               

               Conread position:
               7-333
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               50, 37
               

               Conread position:
               8-406
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               254
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               46, 37
               

               Conread position:
               8-410
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               43, 32
               

               Conread position:
               8-414
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               250
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               98, 119
               

               Conread position:
               8-414
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               255
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               8-414
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               263
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               49, 39
               

               Conread position:
               8-414
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               13-414
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 45
               

               Conread position:
               13-414
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               105, 123
               

               Conread position:
               13-414
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               104, 112
               

               Conread position:
               14-333
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               294, 282
               

               Conread position:
               14-336
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               196, 201
               

               Conread position:
               14-339
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-360
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 193
               

               Conread position:
               14-369
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               233
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               113, 98
               

               Conread position:
               14-397
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 137
               

               Conread position:
               14-397
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               245
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               40, 28
               

               Conread position:
               14-400
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               43, 27
               

               Conread position:
               14-406
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               244
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-414
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               251
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-414
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-414
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               258
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               43, 27
               

               Conread position:
               14-414
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 111
               

               Conread position:
               14-414
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 27
               

               Conread position:
               14-415
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               260
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               181, 211
               

               Conread position:
               15-410
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               161, 0
               

               Conread position:
               15-414
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               252
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               48, 30
               

               Conread position:
               16-368
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               229
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               106, 136
               

               Conread position:
               16-385
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               106, 136
               

               Conread position:
               16-405
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               42, 28
               

               Conread position:
               16-414
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               242, 0
               

               Conread position:
               17-346
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               217
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               16, 32
               

               Conread position:
               17-414
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               40, 33
               

               Conread position:
               47-409
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               142, 167
               

               Conread position:
               56-367
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               92, 87
               

               Conread position:
               56-414
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               24, 18
               

               Conread position:
               56-414
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               85, 78
               

               Conread position:
               56-414
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               230
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               57-284
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               57-414
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               68-368
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               83, 78
               

               Conread position:
               68-414
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               80, 76
               

               Conread position:
               69-367
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               52, 71
               

               Conread position:
               70-385
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               81, 74
               

               Conread position:
               73-414
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               74-378
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               74-400
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               74-414
               

               Cow position:
               
               

               Alignm length:
               341
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               80-406
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               214
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               130-376
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               15, 29
               

               Conread position:
               140-414
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               140-414
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               151-380
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               235-411
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.