Cow genome map
| Conread name: | Ss1.1-rpliv0124_d2.5 |
| Conread position: | 1-230 |
| Cow position: | chr23:24546901-24546672 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-335 |
| Cow position: | chr23:25660412-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-353 |
| Cow position: | chr23:24639729-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 55, 44 |
| Conread position: | 1-410 |
| Cow position: | chr23:24639645-24640054 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 189 |
| Conread position: | 1-414 |
| Cow position: | chr23:24560629-24560216 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-414 |
| Cow position: | chr23:24639225-24639638 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 1-414 |
| Cow position: | chr23:24639561-24639974 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-414 |
| Cow position: | chr23:25660244-25660657 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 119 |
| Conread position: | 2-263 |
| Cow position: | chr23:24654127-24654388 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-333 |
| Cow position: | chr23:24535783-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 143, 152 |
| Conread position: | 2-334 |
| Cow position: | chr23:25626709-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 2-341 |
| Cow position: | chr23:24626402-24626741 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 306, 300 |
| Conread position: | 2-346 |
| Cow position: | chr23:25698562-25698218 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 222, 205 |
| Conread position: | 2-370 |
| Cow position: | chr23:24522558-24522190 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 315, 320 |
| Conread position: | 2-370 |
| Cow position: | chr23:24560460-24560093 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 223, 216 |
| Conread position: | 2-405 |
| Cow position: | chr23:24535867-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 2-405 |
| Cow position: | chr23:25698478-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 140, 124 |
| Conread position: | 2-406 |
| Cow position: | chr23:25626544-25626945 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-413 |
| Cow position: | chr23:25660329-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 62, 41 |
| Conread position: | 2-414 |
| Cow position: | chr23:24547236-24546824 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr23:24560544-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr23:24560712-24560300 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 44 |
| Conread position: | 2-414 |
| Cow position: | chr23:24560796-24560384 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr23:24639310-24639722 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 79 |
| Conread position: | 2-414 |
| Cow position: | chr23:25626208-25626617 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 312, 317 |
| Conread position: | 2-414 |
| Cow position: | chr23:25626460-25626869 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 75 |
| Conread position: | 2-432 |
| Cow position: | chr23:24547068-24546637 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 0 |
| Conread position: | 3-405 |
| Cow position: | chr23:24626319-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-414 |
| Cow position: | chr23:24560879-24560468 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 300 |
| Conread position: | 3-414 |
| Cow position: | chr23:24639395-24639806 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 124 |
| Conread position: | 3-414 |
| Cow position: | chr23:25698645-25698234 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 4-322 |
| Cow position: | chr23:25698392-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 5-414 |
| Cow position: | chr23:24536116-24535707 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 56 |
| Conread position: | 6-400 |
| Cow position: | chr23:24536031-24535637 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-411 |
| Cow position: | chr23:25626046-25626449 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 115, 145 |
| Conread position: | 13-260 |
| Cow position: | chr23:24626497-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 135, 130 |
| Conread position: | 13-405 |
| Cow position: | chr23:25626135-25626527 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 390, 386 |
| Conread position: | 14-414 |
| Cow position: | chr23:24547140-24546740 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-414 |
| Cow position: | chr23:25660173-25660573 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 264 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 17-414 |
| Cow position: | chr23:24535936-24535539 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 46, 64 |
| Conread position: | 56-414 |
| Cow position: | chr23:24547266-24546908 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 66-406 |
| Cow position: | chr23:24654021-24654363 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 67-405 |
| Cow position: | chr23:25724052-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-414 |
| Cow position: | chr23:24560897-24560552 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 242, 22 |
| Conread position: | 68-414 |
| Cow position: | chr23:24522576-24522230 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 331, 337 |
| Conread position: | 70-414 |
| Cow position: | chr23:24626302-24626646 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 239, 232 |
| Conread position: | 70-421 |
| Cow position: | chr23:25660145-25660496 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 245, 241 |
| Conread position: | 72-414 |
| Cow position: | chr23:24547334-24546992 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 150, 141 |
| Conread position: | 147-414 |
| Cow position: | chr23:24654018-24654287 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 150-427 |
| Cow position: | chr23:25724053-25723776 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-405 |
| Cow position: | chr23:24521982-24521732 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 156-414 |
| Cow position: | chr23:25626026-25626284 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 176-414 |
| Cow position: | chr23:25724111-25723873 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 28, 15 |
Show alignments to all cow chromosomes.