Cow genome map
| Conread name: | Ss1.1-rpliv0124_d2.5 |
| Conread position: | 1-414 |
| Cow position: | chr24:17036034-17035621 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 207, 202 |
| Conread position: | 1-414 |
| Cow position: | chr24:17036118-17035705 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-417 |
| Cow position: | chr24:17035362-17034946 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 386, 392 |
| Conread position: | 2-369 |
| Cow position: | chr24:17035445-17035078 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-410 |
| Cow position: | chr24:17077916-17077508 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr24:17035697-17035285 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr24:17035865-17035453 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr24:17035949-17035537 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 301 |
| Conread position: | 2-414 |
| Cow position: | chr24:17036285-17035873 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr24:17036537-17036125 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr24:17070468-17070880 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 263 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 223, 216 |
| Conread position: | 8-324 |
| Cow position: | chr24:17070726-17071042 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 216, 205 |
| Conread position: | 8-335 |
| Cow position: | chr24:17013179-17013506 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-414 |
| Cow position: | chr24:17036363-17035957 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 295 |
| Conread position: | 8-414 |
| Cow position: | chr24:17036612-17036209 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 8-414 |
| Cow position: | chr24:17070558-17070964 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 256 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-400 |
| Cow position: | chr24:17070648-17071034 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 14-414 |
| Cow position: | chr24:17035601-17035201 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-425 |
| Cow position: | chr24:17077988-17077577 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-414 |
| Cow position: | chr24:17035768-17035369 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-414 |
| Cow position: | chr24:17078153-17077756 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 255 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-417 |
| Cow position: | chr24:17078069-17077669 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-405 |
| Cow position: | chr24:17035508-17035126 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 83 |
| Conread position: | 23-414 |
| Cow position: | chr24:17036432-17036041 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-414 |
| Cow position: | chr24:17036147-17035789 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 247 |
| Conread position: | 70-414 |
| Cow position: | chr24:17070368-17070712 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 75-294 |
| Cow position: | chr24:16986428-16986647 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 75-400 |
| Cow position: | chr24:17013162-17013487 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 143 |
| Conread position: | 80-414 |
| Cow position: | chr24:17070462-17070796 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 155-414 |
| Cow position: | chr24:17078351-17078092 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 159-386 |
| Cow position: | chr24:16986428-16986655 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 123, 114 |
| Conread position: | 159-414 |
| Cow position: | chr24:17013162-17013417 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 240-414 |
| Cow position: | chr24:16986425-16986599 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.