Cow genome map


           Conread name:
           Ss1.1-rpliv0124_d2.5
        

               Conread position:
               1-414
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               262
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               56, 43
               

               Conread position:
               2-247
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-279
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               110, 124
               

               Conread position:
               2-300
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-302
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               52, 42
               

               Conread position:
               2-326
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               54, 35
               

               Conread position:
               2-361
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               207, 203
               

               Conread position:
               2-367
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               227
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               119, 139
               

               Conread position:
               2-367
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-378
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 193
               

               Conread position:
               2-386
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               244
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-394
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               55, 48
               

               Conread position:
               2-397
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               246
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               143, 152
               

               Conread position:
               2-397
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               55, 43
               

               Conread position:
               2-405
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-405
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               257
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               385, 378
               

               Conread position:
               2-406
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               261
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               313, 319
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 42
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 211
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               259
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               55, 48
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 45
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               262
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               378, 0
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               262
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               255
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               54, 47
               

               Conread position:
               2-414
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               145, 151
               

               Conread position:
               2-427
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               273
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               55, 48
               

               Conread position:
               3-300
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-324
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               54, 47
               

               Conread position:
               3-361
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               120, 138
               

               Conread position:
               3-414
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 47
               

               Conread position:
               5-374
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               73, 67
               

               Conread position:
               6-323
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-357
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               145, 139
               

               Conread position:
               6-368
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               243
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               51, 39
               

               Conread position:
               6-375
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               47, 38
               

               Conread position:
               6-414
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               258
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               6-414
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               259
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-339
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               15, 114
               

               Conread position:
               7-379
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               239
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               50, 43
               

               Conread position:
               7-400
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               50, 38
               

               Conread position:
               7-405
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               50, 43
               

               Conread position:
               8-237
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               26, 30
               

               Conread position:
               8-295
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               45, 37
               

               Conread position:
               8-400
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 210
               

               Conread position:
               8-400
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 37
               

               Conread position:
               8-405
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 37
               

               Conread position:
               8-414
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               45, 36
               

               Conread position:
               8-414
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               342, 69
               

               Conread position:
               9-397
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               238
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               20, 218
               

               Conread position:
               9-407
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               245
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               126, 132
               

               Conread position:
               12-368
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               141, 59
               

               Conread position:
               14-286
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               139, 129
               

               Conread position:
               14-356
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               42, 30
               

               Conread position:
               14-361
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               217
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-367
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               39, 30
               

               Conread position:
               14-369
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               42, 31
               

               Conread position:
               14-378
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               240
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               40, 30
               

               Conread position:
               14-379
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               210, 203
               

               Conread position:
               14-386
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               243
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               210, 200
               

               Conread position:
               14-389
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               363, 311
               

               Conread position:
               14-400
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               43, 34
               

               Conread position:
               14-405
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               139, 129
               

               Conread position:
               14-414
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 36
               

               Conread position:
               14-414
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               14-426
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               43, 34
               

               Conread position:
               15-367
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               24, 32
               

               Conread position:
               15-405
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               252
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               112, 126
               

               Conread position:
               17-338
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               258, 264
               

               Conread position:
               17-405
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               256
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               26, 18
               

               Conread position:
               17-414
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 11
               

               Conread position:
               20-414
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 24
               

               Conread position:
               41-386
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               88, 103
               

               Conread position:
               53-366
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               56-323
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               169
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               165, 156
               

               Conread position:
               56-361
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               165, 156
               

               Conread position:
               56-367
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               214, 208
               

               Conread position:
               56-379
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               204
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               56-414
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               76, 85
               

               Conread position:
               58-337
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               163, 150
               

               Conread position:
               73-414
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               213
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               72, 82
               

               Conread position:
               74-414
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               171, 165
               

               Conread position:
               76-406
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               78-330
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               147, 135
               

               Conread position:
               78-411
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               212
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               43, 63
               

               Conread position:
               79-366
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               66, 74
               

               Conread position:
               79-414
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               142, 134
               

               Conread position:
               98-414
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               210, 200
               

               Conread position:
               125-414
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               82, 92
               

               Conread position:
               150-414
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               151-414
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               26, 5
               

               Conread position:
               159-410
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               219, 226
               

               Conread position:
               160-397
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               161-391
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               58, 65
               

               Conread position:
               162-385
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               224-414
               

               Cow position:
               
               

               Alignm length:
               191
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.