Cow genome map

Conread name: Ss1.1-rpliv0124_d2.5

Conread position: 1-414
Cow position: chr25:33144941-33145351 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 262
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 56, 43

Conread position: 2-247
Cow position: chr25:33145191-33145436 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 155
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 2-279
Cow position: chr25:33157044-33156766 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 179
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 110, 124

Conread position: 2-300
Cow position: chr25:23420560-23420858 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 184
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 2-302
Cow position: chr25:4657372-4657072 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 188
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 52, 42

Conread position: 2-326
Cow position: chr25:33145107-33145431 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 209
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 35

Conread position: 2-361
Cow position: chr25:36800976-36801335 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 218
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 207, 203

Conread position: 2-367
Cow position: chr25:33298572-33298937 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 227
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 119, 139

Conread position: 2-367
Cow position: chr25:33299160-33299525 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 228
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 2-378
Cow position: chr25:34447199-34447575 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 193

Conread position: 2-386
Cow position: chr25:23420392-23420776 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 244
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 2-394
Cow position: chr25:36800808-36801200 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 243
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 55, 48

Conread position: 2-397
Cow position: chr25:33305310-33304918 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 246
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 143, 152

Conread position: 2-397
Cow position: chr25:34762922-34763314 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 246
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 43

Conread position: 2-405
Cow position: chr25:33127811-33128214 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-405
Cow position: chr25:36801552-36801955 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 257
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 385, 378

Conread position: 2-406
Cow position: chr25:34447283-34447687 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 261
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 313, 319

Conread position: 2-414
Cow position: chr25:33157212-33156800 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 42

Conread position: 2-414
Cow position: chr25:33157380-33156968 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 211

Conread position: 2-414
Cow position: chr25:33298824-33299236 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 259
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 55, 48

Conread position: 2-414
Cow position: chr25:33299076-33299488 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 249
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position: chr25:34447115-34447527 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 45

Conread position: 2-414
Cow position: chr25:34769611-34769202 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 262
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 378, 0

Conread position: 2-414
Cow position: chr25:34769695-34769283 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position: chr25:34769779-34769367 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 262
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position: chr25:36800892-36801304 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 255
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 54, 47

Conread position: 2-414
Cow position: chr25:36801384-36801796 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 256
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 145, 151

Conread position: 2-427
Cow position: chr25:34769863-34769438 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 273
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 55, 48

Conread position: 3-300
Cow position: chr25:326507-326804 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 192
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 3-324
Cow position: chr25:33127896-33128217 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 213
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 54, 47

Conread position: 3-361
Cow position: chr25:34732598-34732239 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 223
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 120, 138

Conread position: 3-414
Cow position: chr25:33157463-33157052 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 47

Conread position: 5-374
Cow position: chr25:34473519-34473885 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 224
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 73, 67

Conread position: 6-323
Cow position: chr25:36801640-36801957 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 199
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 6-357
Cow position: chr25:34732343-34731992 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 213
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 145, 139

Conread position: 6-368
Cow position: chr25:22235842-22236204 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 243
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 51, 39

Conread position: 6-375
Cow position: chr25:25652957-25653324 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 221
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 38

Conread position: 6-414
Cow position: chr25:34447035-34447443 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 258
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 6-414
Cow position: chr25:34769943-34769535 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 259
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 7-339
Cow position: chr25:34473687-34474018 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 207
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 114

Conread position: 7-379
Cow position: chr25:34763344-34763713 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 239
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 50, 43

Conread position: 7-400
Cow position: chr25:34763260-34763650 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 241
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 50, 38

Conread position: 7-405
Cow position: chr25:34763011-34763406 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 242
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 50, 43

Conread position: 8-237
Cow position: chr25:427344-427573 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 149
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 26, 30

Conread position: 8-295
Cow position: chr25:22236012-22236299 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 181
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 37

Conread position: 8-400
Cow position: chr25:34770025-34769633 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 210

Conread position: 8-400
Cow position: chr25:36800730-36801122 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 238
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 46, 37

Conread position: 8-405
Cow position: chr25:33127733-33128130 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 37

Conread position: 8-414
Cow position: chr25:33144864-33145267 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 258
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 45, 36

Conread position: 8-414
Cow position: chr25:33305387-33304985 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 251
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 342, 69

Conread position: 9-397
Cow position: chr25:34714132-34714522 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 238
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 218

Conread position: 9-407
Cow position: chr25:326429-326827 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 245
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 126, 132

Conread position: 12-368
Cow position: chr25:414756-414407 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 224
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 141, 59

Conread position: 14-286
Cow position: chr25:366746-367018 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 173
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 139, 129

Conread position: 14-356
Cow position: chr25:33157116-33156775 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 228
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 42, 30

Conread position: 14-361
Cow position: chr25:33298920-33299267 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 217
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 14-367
Cow position: chr25:33299004-33299357 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 227
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 39, 30

Conread position: 14-369
Cow position: chr25:23420488-23420843 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 228
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 42, 31

Conread position: 14-378
Cow position: chr25:22235934-22236298 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 240
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 40, 30

Conread position: 14-379
Cow position: chr25:34447379-34447742 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 232
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 210, 203

Conread position: 14-386
Cow position: chr25:23420320-23420692 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 243
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 210, 200

Conread position: 14-389
Cow position: chr25:33299508-33299878 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 232
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 363, 311

Conread position: 14-400
Cow position: chr25:33305943-33305563 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 237
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 34

Conread position: 14-405
Cow position: chr25:346469-346860 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 246
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 139, 129

Conread position: 14-414
Cow position: chr25:33157284-33156884 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 36

Conread position: 14-414
Cow position: chr25:34770103-34769703 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-426
Cow position: chr25:36800652-36801064 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 250
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 34

Conread position: 15-367
Cow position: chr25:33298669-33299021 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 219
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 24, 32

Conread position: 15-405
Cow position: chr25:33145036-33145426 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 252
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 112, 126

Conread position: 17-338
Cow position: chr25:326947-327268 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 198
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 258, 264

Conread position: 17-405
Cow position: chr25:34446962-34447350 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 256
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 26, 18

Conread position: 17-414
Cow position: chr25:33157532-33157136 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 11

Conread position: 20-414
Cow position: chr25:33127661-33128055 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 24

Conread position: 41-386
Cow position: chr25:18642207-18641860 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 219
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 103

Conread position: 53-366
Cow position: chr25:34732632-34732319 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 204
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 56-323
Cow position: chr25:34763474-34763741 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 169
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 165, 156

Conread position: 56-361
Cow position: chr25:34763141-34763446 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 165, 156

Conread position: 56-367
Cow position: chr25:36801522-36801833 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 203
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 214, 208

Conread position: 56-379
Cow position: chr25:33299382-33299705 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 204
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 56-414
Cow position: chr25:33299298-33299656 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 229
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 76, 85

Conread position: 58-337
Cow position: chr25:34762810-34763088 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 179
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 163, 150

Conread position: 73-414
Cow position: chr25:36801371-36801712 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 213
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 72, 82

Conread position: 74-414
Cow position: chr25:33144846-33145183 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 207
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 171, 165

Conread position: 76-406
Cow position: chr25:366724-367054 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 199
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 78-330
Cow position: chr25:427330-427582 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 165
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 147, 135

Conread position: 78-411
Cow position: chr25:326924-327257 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 212
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 43, 63

Conread position: 79-366
Cow position: chr25:33298565-33298852 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 181
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 66, 74

Conread position: 79-414
Cow position: chr25:36800633-36800968 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 205
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 142, 134

Conread position: 98-414
Cow position: chr25:23420320-23420636 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 203
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 210, 200

Conread position: 125-414
Cow position: chr25:18642207-18641915 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 186
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 82, 92

Conread position: 150-414
Cow position: chr25:34447011-34447275 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 174
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 151-414
Cow position: chr25:22235819-22236082 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 178
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 26, 5

Conread position: 159-410
Cow position: chr25:414698-414448 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 169
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 219, 226

Conread position: 160-397
Cow position: chr25:34446937-34447174 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 156
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 161-391
Cow position: chr25:34433020-34433251 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 58, 65

Conread position: 162-385
Cow position: chr25:427330-427553 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 148
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 224-414
Cow position: chr25:427308-427498 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 127
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.