Cow genome map
| Conread name: | Ss1.1-rpliv0124_d2.5 |
| Conread position: | 1-397 |
| Cow position: | chr28:11333877-11333481 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 221, 213 |
| Conread position: | 2-237 |
| Cow position: | chr28:34696341-34696576 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-323 |
| Cow position: | chr28:7758013-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 128, 136 |
| Conread position: | 2-345 |
| Cow position: | chr28:7758417-7758760 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-369 |
| Cow position: | chr28:7757761-7758128 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 151, 143 |
| Conread position: | 2-397 |
| Cow position: | chr28:9253112-9253507 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-397 |
| Cow position: | chr28:9290181-9290570 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 2-400 |
| Cow position: | chr28:7757677-7758075 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 283, 307 |
| Conread position: | 2-405 |
| Cow position: | chr28:9253196-9253599 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 258 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr28:7810357-7810760 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 2-414 |
| Cow position: | chr28:34696005-34696417 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr28:34696089-34696501 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 68 |
| Conread position: | 3-400 |
| Cow position: | chr28:7758334-7758731 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 127, 138 |
| Conread position: | 4-397 |
| Cow position: | chr28:7757511-7757904 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-323 |
| Cow position: | chr28:34696261-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 125 |
| Conread position: | 6-336 |
| Cow position: | chr28:33210325-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 6-367 |
| Cow position: | chr28:34673452-34673813 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-405 |
| Cow position: | chr28:34696177-34696576 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-396 |
| Cow position: | chr28:9253033-9253422 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 49, 38 |
| Conread position: | 8-393 |
| Cow position: | chr28:34695927-34696312 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 8-414 |
| Cow position: | chr28:9298749-9299152 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 137, 69 |
| Conread position: | 14-250 |
| Cow position: | chr28:9253376-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 131, 139 |
| Conread position: | 14-360 |
| Cow position: | chr28:7757605-7757951 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 268, 262 |
| Conread position: | 14-414 |
| Cow position: | chr28:7757437-7757837 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 15-419 |
| Cow position: | chr28:34695850-34696253 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 0 |
| Conread position: | 16-414 |
| Cow position: | chr28:11334114-11333716 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 116, 125 |
| Conread position: | 39-414 |
| Cow position: | chr28:11333923-11333548 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 48-414 |
| Cow position: | chr28:11333997-11333632 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 339, 9 |
| Conread position: | 56-334 |
| Cow position: | chr28:9253334-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-367 |
| Cow position: | chr28:7757983-7758294 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-367 |
| Cow position: | chr28:7810327-7810629 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 168, 157 |
| Conread position: | 56-405 |
| Cow position: | chr28:34673418-34673767 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 73, 60 |
| Conread position: | 56-414 |
| Cow position: | chr28:9298713-9299068 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 68-360 |
| Cow position: | chr28:7757407-7757699 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 68-400 |
| Cow position: | chr28:9253010-9253342 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-414 |
| Cow position: | chr28:9299218-9299558 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 78-414 |
| Cow position: | chr28:34695829-34696165 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 161-414 |
| Cow position: | chr28:33210228-33210481 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 246-427 |
| Cow position: | chr28:34695829-34696010 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 62, 41 |
Show alignments to all cow chromosomes.