Cow genome map
| Conread name: | Ss1.1-rpliv0124_d2.5 |
| Conread position: | 1-166 |
| Cow position: | chr6:49396805-49396970 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-261 |
| Cow position: | chr6:49396722-49396983 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 250, 0 |
| Conread position: | 2-360 |
| Cow position: | chr6:49341085-49341443 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-400 |
| Cow position: | chr6:49340497-49340895 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 252 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr6:49396056-49396462 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 2-414 |
| Cow position: | chr6:49396386-49396798 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-415 |
| Cow position: | chr6:49396554-49396967 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 11 |
| Conread position: | 3-414 |
| Cow position: | chr6:49395889-49396294 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 340, 0 |
| Conread position: | 6-286 |
| Cow position: | chr6:49429249-49429527 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 6-406 |
| Cow position: | chr6:49362436-49362824 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 6-411 |
| Cow position: | chr6:49429081-49429486 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-414 |
| Cow position: | chr6:49428661-49429069 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 64 |
| Conread position: | 6-414 |
| Cow position: | chr6:49428913-49429321 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 6-419 |
| Cow position: | chr6:49428997-49429409 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 374 |
| Conread position: | 6-427 |
| Cow position: | chr6:49428493-49428914 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 374 |
| Conread position: | 8-363 |
| Cow position: | chr6:49396644-49396999 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-414 |
| Cow position: | chr6:49396476-49396882 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-425 |
| Cow position: | chr6:49362198-49362603 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 13-397 |
| Cow position: | chr6:49362035-49362407 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 289, 0 |
| Conread position: | 13-414 |
| Cow position: | chr6:49428415-49428817 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 131 |
| Conread position: | 14-397 |
| Cow position: | chr6:49341013-49341396 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-414 |
| Cow position: | chr6:49428753-49429153 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 14-414 |
| Cow position: | chr6:49428837-49429237 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 56 |
| Conread position: | 14-427 |
| Cow position: | chr6:49428333-49428746 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-378 |
| Cow position: | chr6:49340594-49340957 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 267, 258 |
| Conread position: | 15-414 |
| Cow position: | chr6:49340426-49340825 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 258 |
| Conread position: | 15-414 |
| Cow position: | chr6:49340678-49341077 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 258 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 15-414 |
| Cow position: | chr6:49340930-49341329 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 256 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-405 |
| Cow position: | chr6:49396232-49396621 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-428 |
| Cow position: | chr6:49395818-49396230 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 17-385 |
| Cow position: | chr6:49429176-49429542 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 329, 0 |
| Conread position: | 17-405 |
| Cow position: | chr6:49396155-49396537 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 17-405 |
| Cow position: | chr6:49396317-49396705 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-414 |
| Cow position: | chr6:49340764-49341161 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 367, 360 |
| Conread position: | 21-414 |
| Cow position: | chr6:49340851-49341245 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 37-358 |
| Cow position: | chr6:49362623-49362948 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 243, 0 |
| Conread position: | 41-405 |
| Cow position: | chr6:49395678-49396039 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 49-405 |
| Cow position: | chr6:49361904-49362259 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 20, 16 |
| Conread position: | 63-368 |
| Cow position: | chr6:49428213-49428519 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 67-367 |
| Cow position: | chr6:49362329-49362629 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-393 |
| Cow position: | chr6:49362005-49362331 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 220, 232 |
| Conread position: | 76-414 |
| Cow position: | chr6:49340403-49340741 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 146-427 |
| Cow position: | chr6:49428213-49428494 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 254, 249 |
| Conread position: | 160-427 |
| Cow position: | chr6:49340403-49340670 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 224, 219 |
| Conread position: | 203-414 |
| Cow position: | chr6:49340362-49340573 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.