Cow genome map

Conread name: Ss1.1-rpliv0124_d2.5

Conread position: 1-372
Cow position: chr7:8277352-8277723 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 240
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 116, 120

Conread position: 1-379
Cow position: chr7:3180125-3180503 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 241
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 1-414
Cow position: chr7:3180461-3180873 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 266
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 44, 48

Conread position: 1-414
Cow position: chr7:18390254-18390667 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 254
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 56, 44

Conread position: 1-414
Cow position: chr7:42879016-42878603 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 259
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 1-414
Cow position: chr7:42879184-42878771 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 261
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 2-300
Cow position: chr7:18390507-18390805 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 189
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 146, 126

Conread position: 2-334
Cow position: chr7:8278109-8278441 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 202
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 219, 204

Conread position: 2-343
Cow position: chr7:1015116-1015457 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 216
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 32, 37

Conread position: 2-360
Cow position: chr7:8277689-8278047 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 228
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 55, 34

Conread position: 2-367
Cow position: chr7:8277941-8278306 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 233
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 49, 41

Conread position: 2-367
Cow position: chr7:18390423-18390788 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 228
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 139, 118

Conread position: 2-367
Cow position: chr7:42878847-42878482 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 229
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 2-368
Cow position: chr7:8242808-8243174 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 223
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 34

Conread position: 2-369
Cow position: chr7:8277773-8278140 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 224
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 235, 193

Conread position: 2-370
Cow position: chr7:8277857-8278225 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 230
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 55, 34

Conread position: 2-370
Cow position: chr7:18390171-18390539 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 238
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 52, 32

Conread position: 2-371
Cow position: chr7:8277605-8277974 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 240
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 55, 34

Conread position: 2-371
Cow position: chr7:8324826-8325195 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 232
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 33, 47

Conread position: 2-371
Cow position: chr7:8325246-8325615 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 240
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 49, 34

Conread position: 2-373
Cow position: chr7:8325750-8326121 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 241
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 55, 34

Conread position: 2-380
Cow position: chr7:8243563-8243941 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 227
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 31, 39

Conread position: 2-385
Cow position: chr7:8277437-8277820 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 239
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 38, 32

Conread position: 2-406
Cow position: chr7:42878679-42878275 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 257
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position: chr7:1014696-1015108 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 264
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 32, 39

Conread position: 2-414
Cow position: chr7:1014948-1015360 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 248
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 42, 46

Conread position: 2-414
Cow position: chr7:3179790-3180202 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 257
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position: chr7:3179958-3180370 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 255
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 2-414
Cow position: chr7:3180042-3180454 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 259
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 128, 139

Conread position: 2-414
Cow position: chr7:8324742-8325154 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 256
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 131, 121

Conread position: 2-414
Cow position: chr7:8325078-8325490 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 253
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 129, 110

Conread position: 2-414
Cow position: chr7:8325582-8325994 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 264
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 49, 34

Conread position: 2-414
Cow position: chr7:11601094-11600682 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 250
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 139, 118

Conread position: 2-414
Cow position: chr7:42878931-42878519 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 256
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 207, 201

Conread position: 2-414
Cow position: chr7:42879099-42878687 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-239
Cow position: chr7:42878505-42878274 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 150
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 8-369
Cow position: chr7:28846690-28847051 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 226
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 117, 111

Conread position: 8-371
Cow position: chr7:8243401-8243764 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 227
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 42, 29

Conread position: 8-414
Cow position: chr7:1014786-1015192 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 261
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 122, 133

Conread position: 8-414
Cow position: chr7:3180300-3180706 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 253
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 8-414
Cow position: chr7:42878757-42878351 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 254
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 10-378
Cow position: chr7:18390095-18390463 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 237
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 27, 57

Conread position: 13-394
Cow position: chr7:1015043-1015424 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 245
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 43, 36

Conread position: 14-359
Cow position: chr7:1014876-1015221 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 226
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 210, 198

Conread position: 14-370
Cow position: chr7:28846612-28846968 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 219
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 209, 203

Conread position: 14-371
Cow position: chr7:8243491-8243848 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 216
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 302, 307

Conread position: 14-397
Cow position: chr7:18390351-18390734 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 246
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 219, 204

Conread position: 14-414
Cow position: chr7:3180222-3180622 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 256
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 299, 305

Conread position: 14-414
Cow position: chr7:3180390-3180790 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 199

Conread position: 15-360
Cow position: chr7:11600829-11600484 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 212
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 192, 188

Conread position: 15-372
Cow position: chr7:8325511-8325868 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 223
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 34, 21

Conread position: 17-342
Cow position: chr7:1014297-1014622 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 196
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 17-414
Cow position: chr7:42879252-42878855 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 250
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 55-414
Cow position: chr7:11600873-11600514 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 226
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 65, 86

Conread position: 56-414
Cow position: chr7:3179760-3180118 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 228
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 68-372
Cow position: chr7:8325228-8325532 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 192
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 67, 55

Conread position: 71-371
Cow position: chr7:8243045-8243345 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 191
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 82, 72

Conread position: 71-409
Cow position: chr7:1014267-1014605 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 209
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 74-406
Cow position: chr7:11601190-11600858 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 211
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 133, 129

Conread position: 82-386
Cow position: chr7:8242804-8243108 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 190
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 41

Conread position: 105-369
Cow position: chr7:1014217-1014481 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 170
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 38, 46

Conread position: 150-414
Cow position: chr7:18390151-18390415 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 172
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 72, 60

Conread position: 152-370
Cow position: chr7:11434496-11434278 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 145
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 154, 145

Conread position: 156-414
Cow position: chr7:1014682-1014940 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 170
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 38, 51

Conread position: 158-379
Cow position: chr7:8277257-8277478 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 152
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 65, 43

Conread position: 158-414
Cow position: chr7:11601190-11600934 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 169
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 45, 52

Conread position: 180-414
Cow position: chr7:3179716-3179950 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 154
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.