Cow genome map
| Conread name: | Ss1.1-rpliv0124_d2.5 |
| Conread position: | 1-372 |
| Cow position: | chr7:8277352-8277723 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 116, 120 |
| Conread position: | 1-379 |
| Cow position: | chr7:3180125-3180503 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-414 |
| Cow position: | chr7:3180461-3180873 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 44, 48 |
| Conread position: | 1-414 |
| Cow position: | chr7:18390254-18390667 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 56, 44 |
| Conread position: | 1-414 |
| Cow position: | chr7:42879016-42878603 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 259 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-414 |
| Cow position: | chr7:42879184-42878771 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-300 |
| Cow position: | chr7:18390507-18390805 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 146, 126 |
| Conread position: | 2-334 |
| Cow position: | chr7:8278109-8278441 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 219, 204 |
| Conread position: | 2-343 |
| Cow position: | chr7:1015116-1015457 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 2-360 |
| Cow position: | chr7:8277689-8278047 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 2-367 |
| Cow position: | chr7:8277941-8278306 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 49, 41 |
| Conread position: | 2-367 |
| Cow position: | chr7:18390423-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 139, 118 |
| Conread position: | 2-367 |
| Cow position: | chr7:42878847-42878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-368 |
| Cow position: | chr7:8242808-8243174 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 2-369 |
| Cow position: | chr7:8277773-8278140 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 235, 193 |
| Conread position: | 2-370 |
| Cow position: | chr7:8277857-8278225 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 2-370 |
| Cow position: | chr7:18390171-18390539 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 2-371 |
| Cow position: | chr7:8277605-8277974 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 2-371 |
| Cow position: | chr7:8324826-8325195 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 2-371 |
| Cow position: | chr7:8325246-8325615 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 2-373 |
| Cow position: | chr7:8325750-8326121 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 2-380 |
| Cow position: | chr7:8243563-8243941 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 31, 39 |
| Conread position: | 2-385 |
| Cow position: | chr7:8277437-8277820 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 2-406 |
| Cow position: | chr7:42878679-42878275 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr7:1014696-1015108 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 264 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 32, 39 |
| Conread position: | 2-414 |
| Cow position: | chr7:1014948-1015360 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 46 |
| Conread position: | 2-414 |
| Cow position: | chr7:3179790-3180202 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr7:3179958-3180370 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-414 |
| Cow position: | chr7:3180042-3180454 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 128, 139 |
| Conread position: | 2-414 |
| Cow position: | chr7:8324742-8325154 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 131, 121 |
| Conread position: | 2-414 |
| Cow position: | chr7:8325078-8325490 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 129, 110 |
| Conread position: | 2-414 |
| Cow position: | chr7:8325582-8325994 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 2-414 |
| Cow position: | chr7:11601094-11600682 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 139, 118 |
| Conread position: | 2-414 |
| Cow position: | chr7:42878931-42878519 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 207, 201 |
| Conread position: | 2-414 |
| Cow position: | chr7:42879099-42878687 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-239 |
| Cow position: | chr7:42878505-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-369 |
| Cow position: | chr7:28846690-28847051 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 117, 111 |
| Conread position: | 8-371 |
| Cow position: | chr7:8243401-8243764 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 29 |
| Conread position: | 8-414 |
| Cow position: | chr7:1014786-1015192 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 122, 133 |
| Conread position: | 8-414 |
| Cow position: | chr7:3180300-3180706 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-414 |
| Cow position: | chr7:42878757-42878351 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-378 |
| Cow position: | chr7:18390095-18390463 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 13-394 |
| Cow position: | chr7:1015043-1015424 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 14-359 |
| Cow position: | chr7:1014876-1015221 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 210, 198 |
| Conread position: | 14-370 |
| Cow position: | chr7:28846612-28846968 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 209, 203 |
| Conread position: | 14-371 |
| Cow position: | chr7:8243491-8243848 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 302, 307 |
| Conread position: | 14-397 |
| Cow position: | chr7:18390351-18390734 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 219, 204 |
| Conread position: | 14-414 |
| Cow position: | chr7:3180222-3180622 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 299, 305 |
| Conread position: | 14-414 |
| Cow position: | chr7:3180390-3180790 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 199 |
| Conread position: | 15-360 |
| Cow position: | chr7:11600829-11600484 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 192, 188 |
| Conread position: | 15-372 |
| Cow position: | chr7:8325511-8325868 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 17-342 |
| Cow position: | chr7:1014297-1014622 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-414 |
| Cow position: | chr7:42879252-42878855 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 55-414 |
| Cow position: | chr7:11600873-11600514 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 86 |
| Conread position: | 56-414 |
| Cow position: | chr7:3179760-3180118 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 68-372 |
| Cow position: | chr7:8325228-8325532 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 71-371 |
| Cow position: | chr7:8243045-8243345 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 82, 72 |
| Conread position: | 71-409 |
| Cow position: | chr7:1014267-1014605 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-406 |
| Cow position: | chr7:11601190-11600858 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 133, 129 |
| Conread position: | 82-386 |
| Cow position: | chr7:8242804-8243108 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 41 |
| Conread position: | 105-369 |
| Cow position: | chr7:1014217-1014481 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 38, 46 |
| Conread position: | 150-414 |
| Cow position: | chr7:18390151-18390415 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 72, 60 |
| Conread position: | 152-370 |
| Cow position: | chr7:11434496-11434278 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 154, 145 |
| Conread position: | 156-414 |
| Cow position: | chr7:1014682-1014940 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 158-379 |
| Cow position: | chr7:8277257-8277478 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 158-414 |
| Cow position: | chr7:11601190-11600934 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 180-414 |
| Cow position: | chr7:3179716-3179950 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.