Cow genome map
| Conread name: | Ss1.1-rpliv0124_d2.5 |
| Conread position: | 1-368 |
| Cow position: | chrX:25324991-25324624 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 144, 152 |
| Conread position: | 2-335 |
| Cow position: | chrX:25310235-25310568 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 37, 45 |
| Conread position: | 2-370 |
| Cow position: | chrX:25310151-25310519 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-405 |
| Cow position: | chrX:13826687-13826284 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 2-414 |
| Cow position: | chrX:25309815-25310227 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 119, 108 |
| Conread position: | 2-414 |
| Cow position: | chrX:25309983-25310395 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 273 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 2-414 |
| Cow position: | chrX:25310067-25310479 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 137, 114 |
| Conread position: | 2-414 |
| Cow position: | chrX:29045167-29044755 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 268 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 2-414 |
| Cow position: | chrX:29045251-29044839 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 94 |
| Conread position: | 8-367 |
| Cow position: | chrX:13826597-13826238 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 8-384 |
| Cow position: | chrX:13826765-13826389 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 8-397 |
| Cow position: | chrX:25324732-25324343 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 46, 39 |
| Conread position: | 8-414 |
| Cow position: | chrX:25309905-25310311 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 49, 42 |
| Conread position: | 8-414 |
| Cow position: | chrX:25325740-25325334 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-397 |
| Cow position: | chrX:29045077-29044688 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 7, 190 |
| Conread position: | 12-368 |
| Cow position: | chrX:25325064-25324708 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-344 |
| Cow position: | chrX:29044987-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 91, 100 |
| Conread position: | 14-360 |
| Cow position: | chrX:25309743-25310089 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 192, 176 |
| Conread position: | 14-414 |
| Cow position: | chrX:25324810-25324410 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 14-414 |
| Cow position: | chrX:25325146-25324746 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-414 |
| Cow position: | chrX:25325230-25324830 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-414 |
| Cow position: | chrX:25325314-25324914 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 14-414 |
| Cow position: | chrX:25325398-25324998 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 17-414 |
| Cow position: | chrX:25325563-25325166 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 292, 286 |
| Conread position: | 19-414 |
| Cow position: | chrX:25325645-25325250 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 199, 205 |
| Conread position: | 19-414 |
| Cow position: | chrX:29045318-29044923 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 21-414 |
| Cow position: | chrX:25324888-25324494 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 55-414 |
| Cow position: | chrX:14181496-14181137 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 62, 80 |
| Conread position: | 55-414 |
| Cow position: | chrX:25325777-25325418 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-411 |
| Cow position: | chrX:14181411-14181056 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 85, 68 |
| Conread position: | 68-400 |
| Cow position: | chrX:25309713-25310045 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 241, 234 |
| Conread position: | 68-414 |
| Cow position: | chrX:25325428-25325082 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 73, 66 |
| Conread position: | 74-356 |
| Cow position: | chrX:29045746-29045464 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 158-414 |
| Cow position: | chrX:29045746-29045490 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.