Cow genome map
| Conread name: | Ss1.1-rpliv0125_p15.5 |
| Conread position: | 1-369 |
| Cow position: | chr22:14468400-14468761 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 1-380 |
| Cow position: | chr22:12385325-12384943 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 1-421 |
| Cow position: | chr22:12475712-12475289 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 288 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 38, 46 |
| Conread position: | 1-421 |
| Cow position: | chr22:12499547-12499970 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 283 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 36, 46 |
| Conread position: | 1-446 |
| Cow position: | chr22:14442133-14442580 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 1-447 |
| Cow position: | chr22:12399587-12399139 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 58, 53 |
| Conread position: | 1-447 |
| Cow position: | chr22:12431147-12430699 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 291, 387 |
| Conread position: | 1-447 |
| Cow position: | chr22:12431987-12431539 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 285 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 295, 429 |
| Conread position: | 1-447 |
| Cow position: | chr22:12432071-12431623 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 1-447 |
| Cow position: | chr22:12432323-12431876 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 295 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 223, 203 |
| Conread position: | 1-447 |
| Cow position: | chr22:14430323-14430771 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 1-451 |
| Cow position: | chr22:11640947-11641399 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 44, 59 |
| Conread position: | 1-451 |
| Cow position: | chr22:12385409-12384957 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 46, 60 |
| Conread position: | 1-451 |
| Cow position: | chr22:12399335-12398883 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 60 |
| Conread position: | 1-451 |
| Cow position: | chr22:12476216-12475764 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 60 |
| Conread position: | 1-451 |
| Cow position: | chr22:14429651-14430103 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 219, 228 |
| Conread position: | 1-451 |
| Cow position: | chr22:14468064-14468516 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 1-454 |
| Cow position: | chr22:12431231-12430777 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 295 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 1-456 |
| Cow position: | chr22:12399671-12399214 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 291 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 46, 60 |
| Conread position: | 1-461 |
| Cow position: | chr22:12499043-12499507 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 60 |
| Conread position: | 2-408 |
| Cow position: | chr22:12399166-12398757 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 2-451 |
| Cow position: | chr22:14430072-14430523 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 135 |
| Conread position: | 3-368 |
| Cow position: | chr22:14468318-14468685 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 136, 151 |
| Conread position: | 3-419 |
| Cow position: | chr22:14468234-14468653 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 128, 154 |
| Conread position: | 3-420 |
| Cow position: | chr22:11641033-11641453 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 3-428 |
| Cow position: | chr22:46654356-46654784 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 3-440 |
| Cow position: | chr22:11640697-11641136 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 58 |
| Conread position: | 3-446 |
| Cow position: | chr22:11640865-11641310 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 3-447 |
| Cow position: | chr22:14429989-14430435 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 151 |
| Conread position: | 3-451 |
| Cow position: | chr22:12476046-12475596 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 293, 378 |
| Conread position: | 3-452 |
| Cow position: | chr22:14468150-14468601 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 122 |
| Conread position: | 3-453 |
| Cow position: | chr22:12458265-12457813 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 3-458 |
| Cow position: | chr22:12475878-12475421 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 3-459 |
| Cow position: | chr22:12499381-12499839 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 3-459 |
| Cow position: | chr22:46654188-46654646 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 3-461 |
| Cow position: | chr22:12431733-12431275 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 271, 266 |
| Conread position: | 3-492 |
| Cow position: | chr22:14429737-14430228 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 4-447 |
| Cow position: | chr22:12431396-12430952 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 210, 202 |
| Conread position: | 5-447 |
| Cow position: | chr22:14467984-14468428 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 51 |
| Conread position: | 6-442 |
| Cow position: | chr22:14430580-14431011 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 139, 118 |
| Conread position: | 6-447 |
| Cow position: | chr22:12458598-12458155 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 31, 44 |
| Conread position: | 10-422 |
| Cow position: | chr22:12458174-12457759 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 113, 126 |
| Conread position: | 11-452 |
| Cow position: | chr22:14441975-14442418 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 52-451 |
| Cow position: | chr22:12458635-12458235 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 244, 13 |
| Conread position: | 60-447 |
| Cow position: | chr22:46654077-46654466 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 236, 368 |
| Conread position: | 72-451 |
| Cow position: | chr22:11666523-11666904 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 85-442 |
| Cow position: | chr22:12399839-12399480 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 135, 143 |
| Conread position: | 86-451 |
| Cow position: | chr22:12385662-12385293 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 90-442 |
| Cow position: | chr22:12498880-12499234 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 90-456 |
| Cow position: | chr22:12432486-12432118 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 202, 340 |
| Conread position: | 105-452 |
| Cow position: | chr22:14468000-14468349 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 185, 262 |
| Conread position: | 113-371 |
| Cow position: | chr22:12545594-12545856 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 143-461 |
| Cow position: | chr22:14467954-14468274 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 149, 287 |
| Conread position: | 166-447 |
| Cow position: | chr22:12432494-12432212 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 126, 264 |
Show alignments to all cow chromosomes.