Cow genome map
| Conread name: | Ss1.1-rpliv0125_p15.5 |
| Conread position: | 1-362 |
| Cow position: | chr25:33157133-33156770 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 53 |
| Conread position: | 1-367 |
| Cow position: | chr25:23420471-23420840 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 58 |
| Conread position: | 1-418 |
| Cow position: | chr25:36801547-36801967 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 1-446 |
| Cow position: | chr25:33298567-33299014 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 1-446 |
| Cow position: | chr25:33298651-33299098 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 43 |
| Conread position: | 1-446 |
| Cow position: | chr25:33298987-33299434 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 274 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 1-446 |
| Cow position: | chr25:34447110-34447557 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 1-446 |
| Cow position: | chr25:34770036-34769589 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 289 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 1-446 |
| Cow position: | chr25:36800719-36801166 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 36, 60 |
| Conread position: | 1-447 |
| Cow position: | chr25:34769700-34769252 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 1-451 |
| Cow position: | chr25:23420387-23420839 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 1-451 |
| Cow position: | chr25:33144937-33145386 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 1-451 |
| Cow position: | chr25:33305398-33304950 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 287 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 2-442 |
| Cow position: | chr25:34447363-34447798 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 71 |
| Conread position: | 2-451 |
| Cow position: | chr25:33298904-33299355 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 3-368 |
| Cow position: | chr25:33299493-33299856 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 58 |
| Conread position: | 3-408 |
| Cow position: | chr25:33145023-33145428 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 3-418 |
| Cow position: | chr25:33299409-33299827 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 3-447 |
| Cow position: | chr25:33157215-33156770 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 276 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 3-447 |
| Cow position: | chr25:33299325-33299771 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 3-451 |
| Cow position: | chr25:33157467-33157017 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 3-452 |
| Cow position: | chr25:36800637-36801088 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 3-456 |
| Cow position: | chr25:33299241-33299696 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 6-447 |
| Cow position: | chr25:36801468-36801911 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 87-402 |
| Cow position: | chr25:366731-367049 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 143-423 |
| Cow position: | chr25:326985-327268 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 228-451 |
| Cow position: | chr25:33127781-33128006 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 64, 202 |
| Conread position: | 230-451 |
| Cow position: | chr25:34433001-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 200 |
| Conread position: | 232-445 |
| Cow position: | chr25:22235896-22236111 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 197 |
| Conread position: | 234-447 |
| Cow position: | chr25:326992-327208 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 65, 161 |
Show alignments to all cow chromosomes.