Cow genome map


           Conread name:
           Ss1.1-rpliv0125_p15.5
        

               Conread position:
               1-244
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               73, 57
               

               Conread position:
               1-370
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               44, 65
               

               Conread position:
               1-374
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               112, 97
               

               Conread position:
               1-394
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               72, 57
               

               Conread position:
               1-438
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               285
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               209, 101
               

               Conread position:
               1-442
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               272
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               198, 228
               

               Conread position:
               1-447
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               281
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               36, 59
               

               Conread position:
               1-447
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               275
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               44, 34
               

               Conread position:
               1-447
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               290
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               33, 59
               

               Conread position:
               1-451
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               277
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               49, 59
               

               Conread position:
               1-451
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               36, 65
               

               Conread position:
               1-451
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               291
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               198, 243
               

               Conread position:
               1-451
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 61
               

               Conread position:
               1-451
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 34
               

               Conread position:
               1-451
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 46
               

               Conread position:
               1-451
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               297, 378
               

               Conread position:
               1-451
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 34
               

               Conread position:
               1-451
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 37
               

               Conread position:
               1-451
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               272
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               51, 58
               

               Conread position:
               1-451
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               283
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               35, 65
               

               Conread position:
               1-456
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               281
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               44, 66
               

               Conread position:
               1-458
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               287
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               44, 68
               

               Conread position:
               1-463
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               296
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               292, 382
               

               Conread position:
               1-463
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               285
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               53, 60
               

               Conread position:
               1-487
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 57
               

               Conread position:
               1-491
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               315
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               42, 60
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 429
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 136
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 34
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 429
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 34
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               501
               

               Alignm identity:
               310
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               156, 151
               

               Conread position:
               2-447
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               287
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               43, 38
               

               Conread position:
               2-447
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               290
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               68, 56
               

               Conread position:
               2-450
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               297
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               54, 59
               

               Conread position:
               2-451
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               294
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               94, 82
               

               Conread position:
               2-451
               

               Cow position:
               
               

               Alignm length:
               461
               

               Alignm identity:
               286
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               31, 42
               

               Conread position:
               3-324
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               34, 56
               

               Conread position:
               3-428
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               278
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               280, 381
               

               Conread position:
               3-447
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               283
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               40, 70
               

               Conread position:
               3-451
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 32
               

               Conread position:
               3-456
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               283
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               33, 58
               

               Conread position:
               3-460
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               300
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               34, 56
               

               Conread position:
               3-475
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 32
               

               Conread position:
               3-491
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               303
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               70, 38
               

               Conread position:
               4-447
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               297
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               33, 42
               

               Conread position:
               6-451
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               293, 54
               

               Conread position:
               14-324
               

               Cow position:
               
               

               Alignm length:
               316
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               253, 21
               

               Conread position:
               72-445
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               249
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               230, 358
               

               Conread position:
               72-488
               

               Cow position:
               
               

               Alignm length:
               420
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 118
               

               Conread position:
               73-341
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               108, 103
               

               Conread position:
               86-492
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 344
               

               Conread position:
               89-451
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               139, 118
               

               Conread position:
               90-433
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               35, 41
               

               Conread position:
               155-447
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               66, 50
               

               Conread position:
               161-465
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               133, 269
               

               Conread position:
               162-491
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               128, 5
               

               Conread position:
               164-451
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               57, 42
               

               Conread position:
               243-451
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               49, 187
               

               Conread position:
               245-411
               

               Cow position:
               
               

               Alignm length:
               170
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               48, 162
               

               Conread position:
               245-492
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               47, 136
               
Show alignments to all cow chromosomes.