Cow genome map
| Conread name: | Ss1.1-rpliv0125_p15.5 |
| Conread position: | 1-244 |
| Cow position: | chr7:11434483-11434240 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 57 |
| Conread position: | 1-370 |
| Cow position: | chr7:42878684-42878312 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 65 |
| Conread position: | 1-374 |
| Cow position: | chr7:8278356-8278723 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 112, 97 |
| Conread position: | 1-394 |
| Cow position: | chr7:11434644-11434255 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 72, 57 |
| Conread position: | 1-438 |
| Cow position: | chr7:8243894-8244312 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 209, 101 |
| Conread position: | 1-442 |
| Cow position: | chr7:18390166-18390609 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 198, 228 |
| Conread position: | 1-447 |
| Cow position: | chr7:1014445-1014887 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 1-447 |
| Cow position: | chr7:11600931-11600484 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 1-447 |
| Cow position: | chr7:11601099-11600652 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 290 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 1-451 |
| Cow position: | chr7:1014943-1015395 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 1-451 |
| Cow position: | chr7:1015027-1015481 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 1-451 |
| Cow position: | chr7:8242887-8243339 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 291 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 198, 243 |
| Conread position: | 1-451 |
| Cow position: | chr7:8243055-8243506 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 61 |
| Conread position: | 1-451 |
| Cow position: | chr7:8243474-8243926 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 34 |
| Conread position: | 1-451 |
| Cow position: | chr7:8243642-8244091 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 1-451 |
| Cow position: | chr7:8324905-8325357 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 378 |
| Conread position: | 1-451 |
| Cow position: | chr7:8325409-8325861 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 1-451 |
| Cow position: | chr7:8325661-8326113 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 37 |
| Conread position: | 1-451 |
| Cow position: | chr7:11601183-11600731 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 1-451 |
| Cow position: | chr7:42879020-42878568 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 283 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 1-456 |
| Cow position: | chr7:42878936-42878479 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 44, 66 |
| Conread position: | 1-458 |
| Cow position: | chr7:42879272-42878813 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 1-463 |
| Cow position: | chr7:8277684-8278146 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 292, 382 |
| Conread position: | 1-463 |
| Cow position: | chr7:8278272-8278725 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 285 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 1-487 |
| Cow position: | chr7:8243307-8243794 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 57 |
| Conread position: | 1-491 |
| Cow position: | chr7:3180373-3180864 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 315 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 1-492 |
| Cow position: | chr7:8277432-8277925 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 429 |
| Conread position: | 1-492 |
| Cow position: | chr7:8277936-8278429 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 136 |
| Conread position: | 1-492 |
| Cow position: | chr7:8325073-8325566 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 34 |
| Conread position: | 1-492 |
| Cow position: | chr7:8325157-8325650 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 429 |
| Conread position: | 1-492 |
| Cow position: | chr7:8325577-8326070 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 34 |
| Conread position: | 1-492 |
| Cow position: | chr7:8325829-8326319 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 156, 151 |
| Conread position: | 2-447 |
| Cow position: | chr7:3179954-3180401 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 2-447 |
| Cow position: | chr7:8242804-8243251 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 290 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 68, 56 |
| Conread position: | 2-450 |
| Cow position: | chr7:8277853-8278303 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 297 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 54, 59 |
| Conread position: | 2-451 |
| Cow position: | chr7:11434811-11434367 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 294 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 94, 82 |
| Conread position: | 2-451 |
| Cow position: | chr7:18389999-18390450 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 3-324 |
| Cow position: | chr7:11600761-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 3-428 |
| Cow position: | chr7:8278022-8278450 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 280, 381 |
| Conread position: | 3-447 |
| Cow position: | chr7:18390336-18390782 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 283 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 40, 70 |
| Conread position: | 3-451 |
| Cow position: | chr7:8277770-8278220 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 3-456 |
| Cow position: | chr7:42878850-42878395 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 3-460 |
| Cow position: | chr7:3180039-3180496 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 3-475 |
| Cow position: | chr7:8324739-8325213 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 32 |
| Conread position: | 3-491 |
| Cow position: | chr7:8277266-8277756 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 303 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 70, 38 |
| Conread position: | 4-447 |
| Cow position: | chr7:1014694-1015139 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 297 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 33, 42 |
| Conread position: | 6-451 |
| Cow position: | chr7:1439817-1440262 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 293, 54 |
| Conread position: | 14-324 |
| Cow position: | chr7:8244144-8244454 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 253, 21 |
| Conread position: | 72-445 |
| Cow position: | chr7:1014846-1015221 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 230, 358 |
| Conread position: | 72-488 |
| Cow position: | chr7:11434657-11434247 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 118 |
| Conread position: | 73-341 |
| Cow position: | chr7:11434824-11434553 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 108, 103 |
| Conread position: | 86-492 |
| Cow position: | chr7:8242804-8243212 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 344 |
| Conread position: | 89-451 |
| Cow position: | chr7:3179705-3180069 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 139, 118 |
| Conread position: | 90-433 |
| Cow position: | chr7:11601261-11600917 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 35, 41 |
| Conread position: | 155-447 |
| Cow position: | chr7:1439460-1439757 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 161-465 |
| Cow position: | chr7:8277256-8277563 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 133, 269 |
| Conread position: | 162-491 |
| Cow position: | chr7:8324731-8325061 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 128, 5 |
| Conread position: | 164-451 |
| Cow position: | chr7:1014272-1014561 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 42 |
| Conread position: | 243-451 |
| Cow position: | chr7:1014267-1014477 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 49, 187 |
| Conread position: | 245-411 |
| Cow position: | chr7:11434974-11434806 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 162 |
| Conread position: | 245-492 |
| Cow position: | chr7:8324729-8324978 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 47, 136 |
Show alignments to all cow chromosomes.