Cow genome map
| Conread name: | Ss1.1-rret01_o24.5 |
| Conread position: | 5-337 |
| Cow position: | chr17:22499268-22498939 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 256, 17 |
| Conread position: | 6-424 |
| Cow position: | chr17:22499437-22499018 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 316, 118 |
| Conread position: | 10-256 |
| Cow position: | chr17:22473716-22473962 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 207, 108 |
| Conread position: | 16-427 |
| Cow position: | chr17:22473470-22473882 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 101 |
| Conread position: | 27-339 |
| Cow position: | chr17:22551865-22551554 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 79 |
| Conread position: | 27-381 |
| Cow position: | chr17:22498912-22498559 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 158, 99 |
| Conread position: | 27-424 |
| Cow position: | chr17:22499080-22498682 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 333, 97 |
| Conread position: | 27-444 |
| Cow position: | chr17:22552537-22552119 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 27-542 |
| Cow position: | chr17:22473397-22473930 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 84 |
| Conread position: | 28-343 |
| Cow position: | chr17:22552956-22552642 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 240, 96 |
| Conread position: | 28-422 |
| Cow position: | chr17:22552368-22551973 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 320, 96 |
| Conread position: | 28-422 |
| Cow position: | chr17:22552620-22552225 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 28-423 |
| Cow position: | chr17:22552788-22552392 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 214, 98 |
| Conread position: | 28-424 |
| Cow position: | chr17:22590206-22589809 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 317, 98 |
| Conread position: | 29-342 |
| Cow position: | chr17:22452148-22451836 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 34-423 |
| Cow position: | chr17:22473572-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 258 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 227, 83 |
| Conread position: | 34-423 |
| Cow position: | chr17:22589864-22589474 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 249, 83 |
| Conread position: | 34-426 |
| Cow position: | chr17:22452227-22451834 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 239, 83 |
| Conread position: | 34-447 |
| Cow position: | chr17:22551942-22551528 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 34-447 |
| Cow position: | chr17:22552194-22551780 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 69, 55 |
| Conread position: | 38-423 |
| Cow position: | chr17:22590028-22589642 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 305, 88 |
| Conread position: | 40-391 |
| Cow position: | chr17:22498983-22498633 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 282, 86 |
| Conread position: | 41-514 |
| Cow position: | chr17:22473327-22473813 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 83 |
| Conread position: | 102-343 |
| Cow position: | chr17:22452411-22452171 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 170, 22 |
Show alignments to all cow chromosomes.