Cow genome map
| Conread name: | Ss1.1-rret01_o24.5 |
| Conread position: | 1-443 |
| Cow position: | chr19:20677401-20677844 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 8-423 |
| Cow position: | chr19:14940119-14940533 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 386, 10 |
| Conread position: | 10-423 |
| Cow position: | chr19:20678082-20678496 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 115 |
| Conread position: | 16-260 |
| Cow position: | chr19:23614829-23615072 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 16-422 |
| Cow position: | chr19:20635412-20635005 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 337, 101 |
| Conread position: | 16-427 |
| Cow position: | chr19:23649439-23649851 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 182, 110 |
| Conread position: | 16-431 |
| Cow position: | chr19:20677668-20678085 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 101 |
| Conread position: | 16-469 |
| Cow position: | chr19:20678256-20678714 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 101 |
| Conread position: | 17-422 |
| Cow position: | chr19:20635663-20635257 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 263 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 361, 101 |
| Conread position: | 17-424 |
| Cow position: | chr19:20635579-20635171 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 100 |
| Conread position: | 17-430 |
| Cow position: | chr19:20678173-20678588 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 25 |
| Conread position: | 25-407 |
| Cow position: | chr19:23614754-23615135 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 236, 99 |
| Conread position: | 27-385 |
| Cow position: | chr19:14959178-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 149, 57 |
| Conread position: | 27-426 |
| Cow position: | chr19:23649870-23650270 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 68, 81 |
| Conread position: | 27-427 |
| Cow position: | chr19:14940640-14941041 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 77, 87 |
| Conread position: | 28-381 |
| Cow position: | chr19:23597346-23597698 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 167, 98 |
| Conread position: | 28-392 |
| Cow position: | chr19:14960242-14959881 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 232, 96 |
| Conread position: | 28-416 |
| Cow position: | chr19:23614253-23614642 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 321, 89 |
| Conread position: | 28-421 |
| Cow position: | chr19:20677596-20677990 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 88 |
| Conread position: | 28-424 |
| Cow position: | chr19:14940305-14940702 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 249, 89 |
| Conread position: | 28-424 |
| Cow position: | chr19:23597262-23597659 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 148, 98 |
| Conread position: | 28-424 |
| Cow position: | chr19:23613413-23613810 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 89 |
| Conread position: | 28-424 |
| Cow position: | chr19:23614337-23614734 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 60, 77 |
| Conread position: | 28-425 |
| Cow position: | chr19:23613833-23614231 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 232, 89 |
| Conread position: | 28-426 |
| Cow position: | chr19:23614505-23614904 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 317, 98 |
| Conread position: | 28-427 |
| Cow position: | chr19:14960410-14960012 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 253, 89 |
| Conread position: | 29-422 |
| Cow position: | chr19:14940054-14940448 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 71, 80 |
| Conread position: | 29-422 |
| Cow position: | chr19:20677513-20677907 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 88 |
| Conread position: | 29-422 |
| Cow position: | chr19:23597095-23597489 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 297, 97 |
| Conread position: | 29-422 |
| Cow position: | chr19:23613918-23614312 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 72, 79 |
| Conread position: | 29-422 |
| Cow position: | chr19:43570242-43569848 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 326, 97 |
| Conread position: | 29-424 |
| Cow position: | chr19:23649788-23650184 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 214, 97 |
| Conread position: | 33-422 |
| Cow position: | chr19:14960155-14959767 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 295, 93 |
| Conread position: | 33-442 |
| Cow position: | chr19:20678021-20678431 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 93 |
| Conread position: | 34-330 |
| Cow position: | chr19:23650129-23650424 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 206, 92 |
| Conread position: | 34-381 |
| Cow position: | chr19:43569985-43569643 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 208, 92 |
| Conread position: | 34-422 |
| Cow position: | chr19:23649625-23650014 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 320, 92 |
| Conread position: | 34-427 |
| Cow position: | chr19:23613671-23614065 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 35-310 |
| Cow position: | chr19:23597437-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 257, 91 |
| Conread position: | 35-423 |
| Cow position: | chr19:14940228-14940617 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 296, 91 |
| Conread position: | 35-431 |
| Cow position: | chr19:20677771-20678168 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 91 |
| Conread position: | 35-442 |
| Cow position: | chr19:23614176-23614584 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 293, 91 |
| Conread position: | 38-422 |
| Cow position: | chr19:23613507-23613892 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 76 |
| Conread position: | 41-422 |
| Cow position: | chr19:20635471-20635089 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 44-426 |
| Cow position: | chr19:20635720-20635337 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 49-422 |
| Cow position: | chr19:23649388-23649762 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 129, 77 |
| Conread position: | 116-424 |
| Cow position: | chr19:23613332-23613642 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 122-392 |
| Cow position: | chr19:14959579-14959309 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-424 |
| Cow position: | chr19:20677359-20677657 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 71, 66 |
| Conread position: | 132-427 |
| Cow position: | chr19:14939988-14940285 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 133, 126 |
Show alignments to all cow chromosomes.