Cow genome map
| Conread name: | Ss1.1-rret01_o24.5 |
| Conread position: | 1-336 |
| Cow position: | chr22:11701137-11701472 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 1-422 |
| Cow position: | chr22:11666483-11666905 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 102 |
| Conread position: | 1-422 |
| Cow position: | chr22:14430186-14430608 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 123 |
| Conread position: | 2-548 |
| Cow position: | chr22:14468265-14468811 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 6 |
| Conread position: | 3-430 |
| Cow position: | chr22:14442082-14442510 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 114 |
| Conread position: | 7-422 |
| Cow position: | chr22:11640734-11641148 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 169, 16 |
| Conread position: | 9-422 |
| Cow position: | chr22:14468105-14468517 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 9 |
| Conread position: | 11-334 |
| Cow position: | chr22:12431104-12430783 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 320, 7 |
| Conread position: | 13-441 |
| Cow position: | chr22:12431860-12431432 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 247, 104 |
| Conread position: | 16-422 |
| Cow position: | chr22:14441927-14442334 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 360, 101 |
| Conread position: | 16-423 |
| Cow position: | chr22:14442263-14442668 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 269 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 17-309 |
| Cow position: | chr22:14442432-14442720 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 17-320 |
| Cow position: | chr22:14430622-14430924 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 17-418 |
| Cow position: | chr22:14430370-14430772 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 107 |
| Conread position: | 17-426 |
| Cow position: | chr22:14429782-14430192 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 88 |
| Conread position: | 18-442 |
| Cow position: | chr22:12458638-12458214 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 224, 12 |
| Conread position: | 23-421 |
| Cow position: | chr22:14467949-14468348 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 101 |
| Conread position: | 24-425 |
| Cow position: | chr22:14468034-14468436 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 102 |
| Conread position: | 26-428 |
| Cow position: | chr22:12431175-12430771 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 150, 100 |
| Conread position: | 27-339 |
| Cow position: | chr22:12499604-12499915 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 229, 99 |
| Conread position: | 27-343 |
| Cow position: | chr22:12475655-12475340 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 149, 98 |
| Conread position: | 27-422 |
| Cow position: | chr22:12399782-12399386 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 318, 99 |
| Conread position: | 27-422 |
| Cow position: | chr22:14430044-14430440 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 237, 90 |
| Conread position: | 27-423 |
| Cow position: | chr22:12499436-12499833 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 67, 77 |
| Conread position: | 27-427 |
| Cow position: | chr22:46654075-46654476 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 321, 97 |
| Conread position: | 27-431 |
| Cow position: | chr22:14429960-14430365 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 82 |
| Conread position: | 27-443 |
| Cow position: | chr22:12475823-12475406 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 66, 81 |
| Conread position: | 28-339 |
| Cow position: | chr22:12385521-12385209 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 61, 79 |
| Conread position: | 28-427 |
| Cow position: | chr22:12431257-12430857 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 97, 109 |
| Conread position: | 28-443 |
| Cow position: | chr22:12458209-12457793 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 318, 89 |
| Conread position: | 28-484 |
| Cow position: | chr22:12431593-12431134 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 293 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 339, 98 |
| Conread position: | 29-340 |
| Cow position: | chr22:12458124-12457814 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 29-346 |
| Cow position: | chr22:11641090-11641406 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 29-397 |
| Cow position: | chr22:12399108-12398741 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 263, 88 |
| Conread position: | 29-401 |
| Cow position: | chr22:14430550-14430921 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 97 |
| Conread position: | 29-404 |
| Cow position: | chr22:12385266-12384891 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 293, 97 |
| Conread position: | 29-422 |
| Cow position: | chr22:11640670-11641064 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 29-422 |
| Cow position: | chr22:11641006-11641400 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 341, 97 |
| Conread position: | 29-422 |
| Cow position: | chr22:12475905-12475511 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 239, 97 |
| Conread position: | 29-423 |
| Cow position: | chr22:12399696-12399301 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 302, 87 |
| Conread position: | 29-424 |
| Cow position: | chr22:14429710-14430106 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 88 |
| Conread position: | 29-427 |
| Cow position: | chr22:12399528-12399129 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 369, 97 |
| Conread position: | 29-428 |
| Cow position: | chr22:12432432-12432032 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 71, 81 |
| Conread position: | 29-431 |
| Cow position: | chr22:14429878-14430282 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 80 |
| Conread position: | 29-548 |
| Cow position: | chr22:14442360-14442879 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 428, 95 |
| Conread position: | 34-422 |
| Cow position: | chr22:12418958-12418569 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 35-441 |
| Cow position: | chr22:12430998-12430591 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 70 |
| Conread position: | 37-339 |
| Cow position: | chr22:46654253-46654554 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 37-427 |
| Cow position: | chr22:46654421-46654812 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 284, 87 |
| Conread position: | 41-422 |
| Cow position: | chr22:12458280-12457898 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 43-422 |
| Cow position: | chr22:14429640-14430020 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 311, 83 |
| Conread position: | 46-427 |
| Cow position: | chr22:12476140-12475758 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 42, 65 |
| Conread position: | 47-422 |
| Cow position: | chr22:11640856-11641232 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 61 |
| Conread position: | 65-413 |
| Cow position: | chr22:12399828-12399479 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 302, 61 |
| Conread position: | 137-427 |
| Cow position: | chr22:12399841-12399549 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 213, 224 |
| Conread position: | 138-427 |
| Cow position: | chr22:46654017-46654308 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 210, 218 |
| Conread position: | 147-431 |
| Cow position: | chr22:14441889-14442176 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 247, 0 |
Show alignments to all cow chromosomes.