Cow genome map
| Conread name: | Ss1.1-rret01_o24.5 |
| Conread position: | 6-257 |
| Cow position: | chr23:24654076-24654324 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 6-343 |
| Cow position: | chr23:24626351-24626685 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 255, 20 |
| Conread position: | 6-427 |
| Cow position: | chr23:24560511-24560092 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 254, 12 |
| Conread position: | 15-471 |
| Cow position: | chr23:24522682-24522225 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 379, 13 |
| Conread position: | 19-427 |
| Cow position: | chr23:25660289-25660698 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 85, 73 |
| Conread position: | 26-258 |
| Cow position: | chr23:24535732-24535501 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 81 |
| Conread position: | 27-259 |
| Cow position: | chr23:24626454-24626685 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 78 |
| Conread position: | 27-422 |
| Cow position: | chr23:24547268-24546872 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 27-422 |
| Cow position: | chr23:24639530-24639926 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 365, 99 |
| Conread position: | 27-422 |
| Cow position: | chr23:24639614-24640010 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 322, 99 |
| Conread position: | 28-257 |
| Cow position: | chr23:24546931-24546703 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 80 |
| Conread position: | 28-337 |
| Cow position: | chr23:24547015-24546707 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 80 |
| Conread position: | 28-344 |
| Cow position: | chr23:24639699-24640014 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 29-339 |
| Cow position: | chr23:25626346-25626652 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 71, 79 |
| Conread position: | 29-343 |
| Cow position: | chr23:25626595-25626908 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 71, 79 |
| Conread position: | 29-443 |
| Cow position: | chr23:24547182-24546767 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 314, 97 |
| Conread position: | 34-400 |
| Cow position: | chr23:25724058-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 67 |
| Conread position: | 34-422 |
| Cow position: | chr23:24535976-24535587 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 367, 84 |
| Conread position: | 34-422 |
| Cow position: | chr23:24560653-24560264 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 360, 92 |
| Conread position: | 34-422 |
| Cow position: | chr23:24560821-24560432 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 359, 92 |
| Conread position: | 34-443 |
| Cow position: | chr23:24560569-24560159 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 333, 92 |
| Conread position: | 35-392 |
| Cow position: | chr23:25660389-25660745 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 238, 90 |
| Conread position: | 43-427 |
| Cow position: | chr23:25660145-25660530 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 51, 64 |
| Conread position: | 43-496 |
| Cow position: | chr23:24536051-24535586 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 284 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 51, 88 |
| Conread position: | 49-446 |
| Cow position: | chr23:25626534-25626930 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 233, 44 |
| Conread position: | 65-339 |
| Cow position: | chr23:24654049-24654322 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 113, 52 |
| Conread position: | 126-427 |
| Cow position: | chr23:24560814-24560511 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 58 |
| Conread position: | 133-427 |
| Cow position: | chr23:25698657-25698361 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 134-424 |
| Cow position: | chr23:24547330-24547038 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 127, 134 |
| Conread position: | 143-422 |
| Cow position: | chr23:24654042-24654323 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 149, 133 |
Show alignments to all cow chromosomes.