Cow genome map
| Conread name: | Ss1.1-rret01_o24.5 |
| Conread position: | 3-320 |
| Cow position: | chr25:36801582-36801896 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 5-342 |
| Cow position: | chr25:34447315-34447649 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 12-259 |
| Cow position: | chr25:23420597-23420843 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 18-337 |
| Cow position: | chr25:33299539-33299853 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 255, 99 |
| Conread position: | 27-259 |
| Cow position: | chr25:34769475-34769244 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 27-417 |
| Cow position: | chr25:33299380-33299771 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 171, 99 |
| Conread position: | 27-422 |
| Cow position: | chr25:33299212-33299608 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 75 |
| Conread position: | 28-339 |
| Cow position: | chr25:34447420-34447728 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 28-421 |
| Cow position: | chr25:36800693-36801087 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 89, 110 |
| Conread position: | 28-422 |
| Cow position: | chr25:23420445-23420840 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 367, 98 |
| Conread position: | 28-424 |
| Cow position: | chr25:34769726-34769329 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 110 |
| Conread position: | 28-429 |
| Cow position: | chr25:36800861-36801263 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 245, 98 |
| Conread position: | 28-471 |
| Cow position: | chr25:34770062-34769614 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 291 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 326, 98 |
| Conread position: | 29-342 |
| Cow position: | chr25:33127865-33128177 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 29-419 |
| Cow position: | chr25:34447001-34447392 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 244, 97 |
| Conread position: | 29-422 |
| Cow position: | chr25:33157410-33157016 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 338, 97 |
| Conread position: | 34-320 |
| Cow position: | chr25:33157069-33156785 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 131, 92 |
| Conread position: | 34-339 |
| Cow position: | chr25:33299051-33299355 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 148, 90 |
| Conread position: | 34-416 |
| Cow position: | chr25:33298631-33299014 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 90, 104 |
| Conread position: | 34-422 |
| Cow position: | chr25:23420367-23420756 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 258, 92 |
| Conread position: | 34-424 |
| Cow position: | chr25:33157237-33156846 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 255 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 300, 92 |
| Conread position: | 34-431 |
| Cow position: | chr25:33298883-33299277 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 60, 92 |
| Conread position: | 38-342 |
| Cow position: | chr25:33127790-33128093 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 138, 88 |
| Conread position: | 38-422 |
| Cow position: | chr25:34769884-34769499 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 316, 87 |
| Conread position: | 41-343 |
| Cow position: | chr25:34769545-34769244 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 41-424 |
| Cow position: | chr25:34447181-34447565 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 90 |
| Conread position: | 47-422 |
| Cow position: | chr25:33157476-33157100 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 320, 79 |
| Conread position: | 65-422 |
| Cow position: | chr25:33127733-33128091 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 333, 61 |
Show alignments to all cow chromosomes.