Cow genome map

Conread name: Ss1.1-rret01_o24.5

Conread position: 1-422
Cow position:
Alignm length: 427
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 18

Conread position: 1-422
Cow position:
Alignm length: 426
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 117

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 125

Conread position: 1-430
Cow position:
Alignm length: 435
Alignm identity: 279
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 330, 125

Conread position: 1-446
Cow position:
Alignm length: 451
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 117

Conread position: 7-422
Cow position:
Alignm length: 418
Alignm identity: 268
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 370, 118

Conread position: 7-431
Cow position:
Alignm length: 429
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 103

Conread position: 8-200
Cow position:
Alignm length: 193
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 110, 0

Conread position: 8-385
Cow position:
Alignm length: 379
Alignm identity: 251
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 345, 116

Conread position: 8-422
Cow position:
Alignm length: 419
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 118

Conread position: 9-422
Cow position:
Alignm length: 418
Alignm identity: 256
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 130, 107

Conread position: 10-422
Cow position:
Alignm length: 417
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 99

Conread position: 10-422
Cow position:
Alignm length: 416
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 114

Conread position: 10-441
Cow position:
Alignm length: 434
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 114

Conread position: 13-221
Cow position:
Alignm length: 211
Alignm identity: 144
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 189, 105

Conread position: 13-404
Cow position:
Alignm length: 394
Alignm identity: 240
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 262, 103

Conread position: 13-426
Cow position:
Alignm length: 419
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 98

Conread position: 13-431
Cow position:
Alignm length: 423
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 30

Conread position: 15-427
Cow position:
Alignm length: 416
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 102

Conread position: 17-368
Cow position:
Alignm length: 355
Alignm identity: 243
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 81, 58

Conread position: 17-420
Cow position:
Alignm length: 409
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 97

Conread position: 17-422
Cow position:
Alignm length: 409
Alignm identity: 258
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 337, 107

Conread position: 19-422
Cow position:
Alignm length: 407
Alignm identity: 241
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 216, 107

Conread position: 21-422
Cow position:
Alignm length: 405
Alignm identity: 263
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 87, 80

Conread position: 21-427
Cow position:
Alignm length: 409
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 96

Conread position: 21-431
Cow position:
Alignm length: 416
Alignm identity: 270
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 165, 105

Conread position: 23-422
Cow position:
Alignm length: 403
Alignm identity: 261
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 82, 87

Conread position: 23-430
Cow position:
Alignm length: 411
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 101

Conread position: 25-423
Cow position:
Alignm length: 403
Alignm identity: 241
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 108

Conread position: 26-258
Cow position:
Alignm length: 234
Alignm identity: 152
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 211, 91

Conread position: 26-424
Cow position:
Alignm length: 404
Alignm identity: 261
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 252, 100

Conread position: 27-330
Cow position:
Alignm length: 305
Alignm identity: 196
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 74, 80

Conread position: 28-228
Cow position:
Alignm length: 203
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 75, 80

Conread position: 28-329
Cow position:
Alignm length: 302
Alignm identity: 191
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 89, 0

Conread position: 28-343
Cow position:
Alignm length: 317
Alignm identity: 195
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 294, 98

Conread position: 28-375
Cow position:
Alignm length: 350
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 82

Conread position: 28-422
Cow position:
Alignm length: 403
Alignm identity: 256
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 60, 93

Conread position: 28-422
Cow position:
Alignm length: 397
Alignm identity: 249
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 370, 89

Conread position: 28-422
Cow position:
Alignm length: 398
Alignm identity: 248
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 294, 96

Conread position: 28-422
Cow position:
Alignm length: 402
Alignm identity: 253
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 250, 89

Conread position: 28-427
Cow position:
Alignm length: 402
Alignm identity: 243
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 350, 97

Conread position: 28-430
Cow position:
Alignm length: 406
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 74

Conread position: 28-447
Cow position:
Alignm length: 423
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 98

Conread position: 28-514
Cow position:
Alignm length: 503
Alignm identity: 312
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 316, 98

Conread position: 29-258
Cow position:
Alignm length: 230
Alignm identity: 154
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 88, 0

Conread position: 29-422
Cow position:
Alignm length: 399
Alignm identity: 247
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 233, 97

Conread position: 29-426
Cow position:
Alignm length: 402
Alignm identity: 261
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 179, 97

Conread position: 29-469
Cow position:
Alignm length: 456
Alignm identity: 288
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 90, 55

Conread position: 29-469
Cow position:
Alignm length: 448
Alignm identity: 282
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 365, 88

Conread position: 33-443
Cow position:
Alignm length: 414
Alignm identity: 258
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 252, 84

Conread position: 35-334
Cow position:
Alignm length: 300
Alignm identity: 194
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 82, 0

Conread position: 35-422
Cow position:
Alignm length: 388
Alignm identity: 238
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 91, 0

Conread position: 35-424
Cow position:
Alignm length: 393
Alignm identity: 257
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 233, 82

Conread position: 35-444
Cow position:
Alignm length: 414
Alignm identity: 249
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 141, 91

Conread position: 38-337
Cow position:
Alignm length: 301
Alignm identity: 191
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 284, 86

Conread position: 38-339
Cow position:
Alignm length: 302
Alignm identity: 188
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 38-422
Cow position:
Alignm length: 388
Alignm identity: 240
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 56, 70

Conread position: 38-422
Cow position:
Alignm length: 390
Alignm identity: 243
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 241, 86

Conread position: 41-441
Cow position:
Alignm length: 404
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 83

Conread position: 42-422
Cow position:
Alignm length: 385
Alignm identity: 253
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 166, 82

Conread position: 46-424
Cow position:
Alignm length: 382
Alignm identity: 239
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 308, 79

Conread position: 46-431
Cow position:
Alignm length: 390
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 80

Conread position: 55-497
Cow position:
Alignm length: 458
Alignm identity: 292
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 43, 55

Conread position: 107-424
Cow position:
Alignm length: 320
Alignm identity: 199
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 291, 19

Conread position: 120-423
Cow position:
Alignm length: 309
Alignm identity: 200
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 153, 140

Show alignments to all cow chromosomes.