Cow genome map
| Conread name: | Ss1.1-rret01_o24.5 |
| Conread position: | 1-422 |
| Cow position: | chr7:8324936-8325358 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 1-422 |
| Cow position: | chr7:8325440-8325862 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 117 |
| Conread position: | 1-427 |
| Cow position: | chr7:8277799-8278226 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 125 |
| Conread position: | 1-430 |
| Cow position: | chr7:8277295-8277726 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 279 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 330, 125 |
| Conread position: | 1-446 |
| Cow position: | chr7:8324768-8325213 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 117 |
| Conread position: | 7-422 |
| Cow position: | chr7:8242840-8243256 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 268 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 370, 118 |
| Conread position: | 7-431 |
| Cow position: | chr7:8324858-8325284 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 103 |
| Conread position: | 8-200 |
| Cow position: | chr7:8325951-8326142 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 8-385 |
| Cow position: | chr7:8243764-8244137 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 345, 116 |
| Conread position: | 8-422 |
| Cow position: | chr7:8243009-8243423 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 118 |
| Conread position: | 9-422 |
| Cow position: | chr7:8278311-8278716 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 130, 107 |
| Conread position: | 10-422 |
| Cow position: | chr7:8325029-8325442 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 99 |
| Conread position: | 10-422 |
| Cow position: | chr7:8325701-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 114 |
| Conread position: | 10-441 |
| Cow position: | chr7:8325533-8325964 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 114 |
| Conread position: | 13-221 |
| Cow position: | chr7:11434440-11434231 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 189, 105 |
| Conread position: | 13-404 |
| Cow position: | chr7:8278231-8278619 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 262, 103 |
| Conread position: | 13-426 |
| Cow position: | chr7:8243432-8243847 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 98 |
| Conread position: | 13-431 |
| Cow position: | chr7:8243350-8243769 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 30 |
| Conread position: | 15-427 |
| Cow position: | chr7:8278065-8278476 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 102 |
| Conread position: | 17-368 |
| Cow position: | chr7:11434597-11434254 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 81, 58 |
| Conread position: | 17-420 |
| Cow position: | chr7:8277899-8278303 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 97 |
| Conread position: | 17-422 |
| Cow position: | chr7:18390213-18390619 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 337, 107 |
| Conread position: | 19-422 |
| Cow position: | chr7:1014656-1015060 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 216, 107 |
| Conread position: | 21-422 |
| Cow position: | chr7:8277567-8277969 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 263 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 87, 80 |
| Conread position: | 21-427 |
| Cow position: | chr7:8325628-8326035 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 96 |
| Conread position: | 21-431 |
| Cow position: | chr7:11434677-11434272 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 165, 105 |
| Conread position: | 23-422 |
| Cow position: | chr7:8243611-8244009 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 82, 87 |
| Conread position: | 23-430 |
| Cow position: | chr7:8325210-8325619 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 101 |
| Conread position: | 25-423 |
| Cow position: | chr7:1439866-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 100, 108 |
| Conread position: | 26-258 |
| Cow position: | chr7:42878544-42878313 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 211, 91 |
| Conread position: | 26-424 |
| Cow position: | chr7:3179925-3180324 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 252, 100 |
| Conread position: | 27-330 |
| Cow position: | chr7:1014916-1015218 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 74, 80 |
| Conread position: | 28-228 |
| Cow position: | chr7:1015253-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 80 |
| Conread position: | 28-329 |
| Cow position: | chr7:11601209-11600909 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 28-343 |
| Cow position: | chr7:1015085-1015399 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 294, 98 |
| Conread position: | 28-375 |
| Cow position: | chr7:8325803-8326149 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 82 |
| Conread position: | 28-422 |
| Cow position: | chr7:18390056-18390451 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 93 |
| Conread position: | 28-422 |
| Cow position: | chr7:18390392-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 370, 89 |
| Conread position: | 28-422 |
| Cow position: | chr7:42878962-42878567 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 294, 96 |
| Conread position: | 28-422 |
| Cow position: | chr7:42879130-42878735 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 250, 89 |
| Conread position: | 28-427 |
| Cow position: | chr7:1014419-1014813 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 350, 97 |
| Conread position: | 28-430 |
| Cow position: | chr7:8325383-8325787 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 74 |
| Conread position: | 28-447 |
| Cow position: | chr7:8277658-8278077 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 98 |
| Conread position: | 28-514 |
| Cow position: | chr7:3180263-3180762 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 312 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 316, 98 |
| Conread position: | 29-258 |
| Cow position: | chr7:11600704-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 29-422 |
| Cow position: | chr7:1015002-1015396 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 233, 97 |
| Conread position: | 29-426 |
| Cow position: | chr7:11434753-11434362 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 179, 97 |
| Conread position: | 29-469 |
| Cow position: | chr7:1439533-1439978 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 55 |
| Conread position: | 29-469 |
| Cow position: | chr7:11600956-11600510 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 282 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 365, 88 |
| Conread position: | 33-443 |
| Cow position: | chr7:3179848-3180259 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 252, 84 |
| Conread position: | 35-334 |
| Cow position: | chr7:11600782-11600484 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 35-422 |
| Cow position: | chr7:3180438-3180824 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 35-424 |
| Cow position: | chr7:11601118-11600728 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 233, 82 |
| Conread position: | 35-444 |
| Cow position: | chr7:3180102-3180513 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 141, 91 |
| Conread position: | 38-337 |
| Cow position: | chr7:42878700-42878402 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 284, 86 |
| Conread position: | 38-339 |
| Cow position: | chr7:1014261-1014561 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 38-422 |
| Cow position: | chr7:3180021-3180406 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 38-422 |
| Cow position: | chr7:42879204-42878819 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 241, 86 |
| Conread position: | 41-441 |
| Cow position: | chr7:8325312-8325712 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 83 |
| Conread position: | 42-422 |
| Cow position: | chr7:11434824-11434450 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 166, 82 |
| Conread position: | 46-424 |
| Cow position: | chr7:8277256-8277635 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 308, 79 |
| Conread position: | 46-431 |
| Cow position: | chr7:8324729-8325116 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 80 |
| Conread position: | 55-497 |
| Cow position: | chr7:8242804-8243258 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 292 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 107-424 |
| Cow position: | chr7:3179754-3180072 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 291, 19 |
| Conread position: | 120-423 |
| Cow position: | chr7:1014258-1014563 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 153, 140 |
Show alignments to all cow chromosomes.