Cow genome map
| Conread name: | Ss1.1-rret22_a12.5 |
| Conread position: | 520-678 |
| Cow position: | chr10:37507941-37508105 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 127 |
| Conread position: | 525-678 |
| Cow position: | chr10:50558727-50558880 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 525-678 |
| Cow position: | chr10:58065982-58066145 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 531-680 |
| Cow position: | chr10:57095005-57095158 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 136 |
| Conread position: | 535-680 |
| Cow position: | chr10:282395-282248 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 535-680 |
| Cow position: | chr10:14947448-14947297 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 51, 118 |
| Conread position: | 536-677 |
| Cow position: | chr10:34903667-34903521 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 110 |
| Conread position: | 536-680 |
| Cow position: | chr10:40999051-40998900 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 536-680 |
| Cow position: | chr10:58651001-58651147 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 537-680 |
| Cow position: | chr10:21348804-21348946 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 538-674 |
| Cow position: | chr10:45371249-45371104 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 538-678 |
| Cow position: | chr10:47543262-47543120 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 104, 57 |
| Conread position: | 538-680 |
| Cow position: | chr10:48316129-48316269 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 57, 95 |
| Conread position: | 539-678 |
| Cow position: | chr10:35731337-35731483 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 546-680 |
| Cow position: | chr10:10104963-10104823 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 546-680 |
| Cow position: | chr10:41676231-41676367 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 546-680 |
| Cow position: | chr10:61509763-61509901 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 91 |
| Conread position: | 547-677 |
| Cow position: | chr10:58451198-58451329 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 90 |
| Conread position: | 547-680 |
| Cow position: | chr10:23346124-23346261 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 97 |
| Conread position: | 548-678 |
| Cow position: | chr10:15817616-15817750 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 548-680 |
| Cow position: | chr10:19191934-19191796 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 549-678 |
| Cow position: | chr10:10120369-10120238 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 7, 38 |
| Conread position: | 549-680 |
| Cow position: | chr10:6242342-6242471 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 81 |
| Conread position: | 550-678 |
| Cow position: | chr10:47785106-47785240 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 550-680 |
| Cow position: | chr10:18751296-18751433 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 551-679 |
| Cow position: | chr10:22390776-22390640 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 551-680 |
| Cow position: | chr10:9575870-9576006 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 551-680 |
| Cow position: | chr10:13764985-13765122 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 551-680 |
| Cow position: | chr10:24756587-24756454 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 551-680 |
| Cow position: | chr10:37415962-37415832 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 9, 94 |
| Conread position: | 551-680 |
| Cow position: | chr10:46327869-46327733 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 551-680 |
| Cow position: | chr10:49029827-49029694 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 552-680 |
| Cow position: | chr10:23478762-23478887 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 552-680 |
| Cow position: | chr10:49862641-49862509 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 82 |
| Conread position: | 552-716 |
| Cow position: | chr10:991833-991996 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 78, 45 |
| Conread position: | 553-674 |
| Cow position: | chr10:14093073-14093199 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 553-675 |
| Cow position: | chr10:27178663-27178539 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 553-680 |
| Cow position: | chr10:25475709-25475575 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 554-705 |
| Cow position: | chr10:32440378-32440214 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 555-680 |
| Cow position: | chr10:13350032-13350167 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 555-680 |
| Cow position: | chr10:37425963-37426091 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 77 |
| Conread position: | 555-680 |
| Cow position: | chr10:65904415-65904286 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 556-680 |
| Cow position: | chr10:10634386-10634261 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 20, 68 |
| Conread position: | 556-680 |
| Cow position: | chr10:54848952-54848820 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 559-680 |
| Cow position: | chr10:2857218-2857089 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 564-686 |
| Cow position: | chr10:38266944-38266818 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.