Cow genome map
| Conread name: | Ss1.1-rret22_a12.5 |
| Conread position: | 519-680 |
| Cow position: | chr12:25561564-25561397 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 116 |
| Conread position: | 525-680 |
| Cow position: | chr12:1952612-1952774 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 117 |
| Conread position: | 534-673 |
| Cow position: | chr12:42622887-42623035 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 535-680 |
| Cow position: | chr12:2964227-2964075 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 536-681 |
| Cow position: | chr12:14986927-14986776 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 117 |
| Conread position: | 538-679 |
| Cow position: | chr12:9766703-9766848 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 546-680 |
| Cow position: | chr12:18582830-18582965 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 546-680 |
| Cow position: | chr12:29180844-29180703 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 546-681 |
| Cow position: | chr12:4594669-4594533 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 40, 111 |
| Conread position: | 547-680 |
| Cow position: | chr12:7884510-7884653 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 547-680 |
| Cow position: | chr12:15151707-15151841 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 547-680 |
| Cow position: | chr12:18123835-18123697 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 102 |
| Conread position: | 547-680 |
| Cow position: | chr12:22859619-22859491 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 547-680 |
| Cow position: | chr12:25528393-25528532 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 547-680 |
| Cow position: | chr12:26217658-26217796 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 99 |
| Conread position: | 548-680 |
| Cow position: | chr12:7902637-7902771 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 87 |
| Conread position: | 549-677 |
| Cow position: | chr12:38196352-38196220 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 551-680 |
| Cow position: | chr12:18518837-18518701 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 551-680 |
| Cow position: | chr12:38679213-38679077 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 551-681 |
| Cow position: | chr12:37169784-37169919 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 58 |
| Conread position: | 552-680 |
| Cow position: | chr12:11836392-11836262 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 91 |
| Conread position: | 552-680 |
| Cow position: | chr12:41159745-41159615 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 42 |
| Conread position: | 553-677 |
| Cow position: | chr12:18551293-18551166 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 553-680 |
| Cow position: | chr12:30806016-30805886 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 555-678 |
| Cow position: | chr12:20637377-20637507 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 555-680 |
| Cow position: | chr12:18978847-18978715 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 558-680 |
| Cow position: | chr12:33851514-33851385 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 558-681 |
| Cow position: | chr12:35669314-35669436 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 71 |
| Conread position: | 559-679 |
| Cow position: | chr12:3579641-3579513 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 559-680 |
| Cow position: | chr12:33949057-33948932 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 86 |
Show alignments to all cow chromosomes.