Cow genome map

Conread name: Ss1.1-rret22_a12.5

Conread position: 484-680
Cow position: chr17:24824554-24824349 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 112, 24

Conread position: 531-678
Cow position: chr17:25511507-25511353 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 116

Conread position: 532-680
Cow position: chr17:35043672-35043818 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 66, 49

Conread position: 536-679
Cow position: chr17:20932585-20932439 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 21

Conread position: 536-680
Cow position: chr17:20071844-20071992 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 538-680
Cow position: chr17:24587880-24587731 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 538-691
Cow position: chr17:30501556-30501715 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 546-660
Cow position: chr17:20930551-20930431 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 14

Conread position: 546-678
Cow position: chr17:24612895-24612759 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 10, 90

Conread position: 546-679
Cow position: chr17:20836340-20836198 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 546-680
Cow position: chr17:25473031-25473173 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 547-678
Cow position: chr17:29084416-29084283 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 84

Conread position: 547-678
Cow position: chr17:32418869-32419007 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 547-680
Cow position: chr17:10016525-10016386 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 110

Conread position: 547-680
Cow position: chr17:32332844-32332984 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 549-679
Cow position: chr17:21718751-21718889 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 549-680
Cow position: chr17:9824914-9824776 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 6, 99

Conread position: 549-680
Cow position: chr17:21003585-21003722 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 124

Conread position: 549-680
Cow position: chr17:21489388-21489518 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 80, 39

Conread position: 549-680
Cow position: chr17:27606759-27606624 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 96

Conread position: 549-680
Cow position: chr17:33154912-33155048 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 36, 81

Conread position: 551-678
Cow position: chr17:8948723-8948855 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 551-678
Cow position: chr17:32989717-32989585 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 551-678
Cow position: chr17:32993383-32993515 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 551-680
Cow position: chr17:946600-946464 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 551-680
Cow position: chr17:8809264-8809398 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 35, 95

Conread position: 551-680
Cow position: chr17:17782295-17782162 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 46, 11

Conread position: 551-680
Cow position: chr17:21039800-21039664 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 551-680
Cow position: chr17:22051347-22051483 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 551-680
Cow position: chr17:22223958-22223822 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 551-680
Cow position: chr17:25128110-25128246 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 551-680
Cow position: chr17:33164576-33164712 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 552-678
Cow position: chr17:6318625-6318758 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 552-680
Cow position: chr17:24883327-24883464 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 552-680
Cow position: chr17:36791367-36791233 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 552-680
Cow position: chr17:39606665-39606537 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 42, 75

Conread position: 552-684
Cow position: chr17:37340788-37340928 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 554-680
Cow position: chr17:4679967-4680102 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 556-680
Cow position: chr17:9260372-9260505 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 558-680
Cow position: chr17:27303743-27303862 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 560-680
Cow position: chr17:40276971-40276847 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 36, 22

Show alignments to all cow chromosomes.