Cow genome map
| Conread name: | Ss1.1-rret22_a12.5 |
| Conread position: | 512-678 |
| Cow position: | chr28:7618913-7619077 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 74, 91 |
| Conread position: | 515-678 |
| Cow position: | chr28:26960667-26960836 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 524-680 |
| Cow position: | chr28:30902358-30902197 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 112 |
| Conread position: | 525-678 |
| Cow position: | chr28:133845-134013 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 536-680 |
| Cow position: | chr28:3257212-3257059 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 536-680 |
| Cow position: | chr28:17948892-17949042 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 539-680 |
| Cow position: | chr28:21868677-21868528 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 546-679 |
| Cow position: | chr28:29416512-29416645 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 546-680 |
| Cow position: | chr28:4016736-4016602 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 86 |
| Conread position: | 546-680 |
| Cow position: | chr28:8936362-8936221 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 9, 112 |
| Conread position: | 547-678 |
| Cow position: | chr28:5255083-5254947 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 547-680 |
| Cow position: | chr28:7350862-7350725 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 547-680 |
| Cow position: | chr28:9705869-9705721 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 547-680 |
| Cow position: | chr28:11305424-11305562 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 548-680 |
| Cow position: | chr28:7131880-7132017 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 35, 88 |
| Conread position: | 548-680 |
| Cow position: | chr28:22500294-22500429 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 90 |
| Conread position: | 549-679 |
| Cow position: | chr28:17740035-17739894 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 550-680 |
| Cow position: | chr28:2151231-2151369 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 550-680 |
| Cow position: | chr28:3492578-3492713 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 550-680 |
| Cow position: | chr28:5204394-5204266 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 36 |
| Conread position: | 550-680 |
| Cow position: | chr28:11987372-11987242 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 550-680 |
| Cow position: | chr28:12055610-12055480 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 551-675 |
| Cow position: | chr28:4071166-4071042 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 81 |
| Conread position: | 551-680 |
| Cow position: | chr28:3678567-3678433 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 551-680 |
| Cow position: | chr28:4013291-4013155 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 551-680 |
| Cow position: | chr28:8787747-8787610 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 551-680 |
| Cow position: | chr28:10533119-10533250 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 551-680 |
| Cow position: | chr28:17943932-17943801 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 551-680 |
| Cow position: | chr28:24082478-24082341 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 551-715 |
| Cow position: | chr28:4101720-4101559 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 57 |
| Conread position: | 552-679 |
| Cow position: | chr28:11422612-11422744 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 552-680 |
| Cow position: | chr28:16369882-16370012 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 553-680 |
| Cow position: | chr28:777882-777746 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 554-679 |
| Cow position: | chr28:21845156-21845029 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 42, 80 |
| Conread position: | 555-679 |
| Cow position: | chr28:5805866-5805739 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 54 |
Show alignments to all cow chromosomes.