Cow genome map
| Conread name: | Ss1.1-rret22_a12.5 |
| Conread position: | 521-680 |
| Cow position: | chr6:44636238-44636404 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 529-680 |
| Cow position: | chr6:3937054-3936888 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 536-680 |
| Cow position: | chr6:32866966-32867113 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 538-680 |
| Cow position: | chr6:34423206-34423353 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 539-680 |
| Cow position: | chr6:57545973-57546123 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 540-680 |
| Cow position: | chr6:60143945-60144092 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 545-678 |
| Cow position: | chr6:30024126-30023993 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 86 |
| Conread position: | 546-680 |
| Cow position: | chr6:120486-120351 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 546-680 |
| Cow position: | chr6:21346907-21347045 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 547-679 |
| Cow position: | chr6:23696241-23696107 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 548-671 |
| Cow position: | chr6:55646703-55646831 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 548-678 |
| Cow position: | chr6:24468153-24468288 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 38, 86 |
| Conread position: | 548-680 |
| Cow position: | chr6:10105738-10105873 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 46, 15 |
| Conread position: | 548-680 |
| Cow position: | chr6:48097357-48097493 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 548-680 |
| Cow position: | chr6:67451126-67451265 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 549-680 |
| Cow position: | chr6:21293253-21293391 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 550-680 |
| Cow position: | chr6:50577759-50577626 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 46, 84 |
| Conread position: | 550-687 |
| Cow position: | chr6:8094042-8094179 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 33, 69 |
| Conread position: | 551-669 |
| Cow position: | chr6:60674074-60673951 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 34, 81 |
| Conread position: | 551-680 |
| Cow position: | chr6:7291554-7291421 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 89 |
| Conread position: | 551-680 |
| Cow position: | chr6:59759412-59759276 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 551-680 |
| Cow position: | chr6:66058466-66058602 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 551-681 |
| Cow position: | chr6:1475580-1475450 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 551-681 |
| Cow position: | chr6:53024568-53024699 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 552-680 |
| Cow position: | chr6:15243081-15242942 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 552-680 |
| Cow position: | chr6:25614848-25614985 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 552-680 |
| Cow position: | chr6:47520296-47520159 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 552-680 |
| Cow position: | chr6:48278653-48278783 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 555-680 |
| Cow position: | chr6:50504695-50504562 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 559-687 |
| Cow position: | chr6:67069580-67069711 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 127 |
| Conread position: | 560-679 |
| Cow position: | chr6:32006222-32006348 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 595-711 |
| Cow position: | chr6:15233179-15233066 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.