Cow genome map
| Conread name: | Ss1.1-rret22_k12.5 |
| Conread position: | 95-476 |
| Cow position: | chr1:67651105-67651502 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 114-470 |
| Cow position: | chr1:100803141-100802783 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 98, 196 |
| Conread position: | 117-476 |
| Cow position: | chr1:82385869-82386237 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 268 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 120-486 |
| Cow position: | chr1:37259157-37259525 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 88, 63 |
| Conread position: | 127-457 |
| Cow position: | chr1:2064287-2064622 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 39, 52 |
| Conread position: | 128-469 |
| Cow position: | chr1:49046931-49047269 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 43, 63 |
| Conread position: | 129-406 |
| Cow position: | chr1:52251863-52252139 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 138 |
| Conread position: | 129-468 |
| Cow position: | chr1:15995014-15994680 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 83, 54 |
| Conread position: | 133-477 |
| Cow position: | chr1:73620879-73620523 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 49 |
| Conread position: | 133-477 |
| Cow position: | chr1:83480718-83481069 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 242 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 79, 108 |
| Conread position: | 134-476 |
| Cow position: | chr1:83055444-83055105 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 232 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 84, 175 |
| Conread position: | 134-478 |
| Cow position: | chr1:13306413-13306749 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 151, 120 |
| Conread position: | 135-477 |
| Cow position: | chr1:73656534-73656177 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 78, 119 |
| Conread position: | 135-479 |
| Cow position: | chr1:32700581-32700924 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 77, 55 |
| Conread position: | 135-479 |
| Cow position: | chr1:37286582-37286224 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 135-489 |
| Cow position: | chr1:69775417-69775786 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 77, 28 |
| Conread position: | 137-450 |
| Cow position: | chr1:50276222-50276542 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 147-444 |
| Cow position: | chr1:73073869-73074166 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 127, 48 |
| Conread position: | 147-473 |
| Cow position: | chr1:68261010-68261349 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 147-477 |
| Cow position: | chr1:30559540-30559889 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 9, 196 |
| Conread position: | 147-477 |
| Cow position: | chr1:49597172-49597520 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 65, 34 |
| Conread position: | 148-458 |
| Cow position: | chr1:63108501-63108180 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 64, 41 |
| Conread position: | 148-460 |
| Cow position: | chr1:87032972-87033283 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 71, 104 |
| Conread position: | 148-470 |
| Cow position: | chr1:54480780-54480443 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 64, 324 |
| Conread position: | 148-471 |
| Cow position: | chr1:15901658-15901982 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 128, 86 |
| Conread position: | 148-473 |
| Cow position: | chr1:15933020-15933353 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 148-477 |
| Cow position: | chr1:4038314-4038644 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 148-477 |
| Cow position: | chr1:58874047-58873707 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 148-491 |
| Cow position: | chr1:37653271-37652926 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 111 |
| Conread position: | 149-402 |
| Cow position: | chr1:48454204-48454456 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 150-477 |
| Cow position: | chr1:56071989-56072309 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 63, 15 |
| Conread position: | 150-477 |
| Cow position: | chr1:72288195-72287855 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 60, 206 |
| Conread position: | 150-495 |
| Cow position: | chr1:37102712-37102355 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 151-477 |
| Cow position: | chr1:33768347-33768026 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 104 |
| Conread position: | 154-471 |
| Cow position: | chr1:56158847-56158538 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 154-477 |
| Cow position: | chr1:9148326-9147996 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 154-479 |
| Cow position: | chr1:26770602-26770263 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 64, 193 |
| Conread position: | 165-391 |
| Cow position: | chr1:36861903-36862129 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 88 |
| Conread position: | 165-477 |
| Cow position: | chr1:26135711-26136014 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 165-479 |
| Cow position: | chr1:90682800-90683118 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 98 |
| Conread position: | 166-477 |
| Cow position: | chr1:51422117-51421802 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 116 |
| Conread position: | 167-435 |
| Cow position: | chr1:3408785-3408509 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 75 |
| Conread position: | 177-469 |
| Cow position: | chr1:35560158-35559861 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 35, 267 |
| Conread position: | 182-479 |
| Cow position: | chr1:5614069-5613784 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 96 |
| Conread position: | 182-483 |
| Cow position: | chr1:47578812-47578492 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 222 |
| Conread position: | 183-470 |
| Cow position: | chr1:8156570-8156287 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 284-476 |
| Cow position: | chr1:25078130-25078318 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 287-477 |
| Cow position: | chr1:29442044-29442229 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 288-454 |
| Cow position: | chr1:79882393-79882228 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 288-470 |
| Cow position: | chr1:28656136-28656321 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 288-477 |
| Cow position: | chr1:95364073-95363883 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 288-484 |
| Cow position: | chr1:82951358-82951159 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 291-488 |
| Cow position: | chr1:64148846-64148650 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 292-469 |
| Cow position: | chr1:74012807-74012981 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 294-450 |
| Cow position: | chr1:82112253-82112407 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 319-479 |
| Cow position: | chr1:7946072-7946233 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 324-477 |
| Cow position: | chr1:80389947-80389796 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 9, 48 |
| Conread position: | 326-479 |
| Cow position: | chr1:97016729-97016578 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 39 |
| Conread position: | 328-477 |
| Cow position: | chr1:60074724-60074578 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 118, 0 |
Show alignments to all cow chromosomes.