Cow genome map
| Conread name: | Ss1.1-rret22_k12.5 |
| Conread position: | 117-469 |
| Cow position: | chr10:3945583-3945224 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 108, 18 |
| Conread position: | 125-478 |
| Cow position: | chr10:13241089-13240736 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 87, 49 |
| Conread position: | 126-472 |
| Cow position: | chr10:17411875-17412240 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 82, 213 |
| Conread position: | 135-460 |
| Cow position: | chr10:20922062-20922396 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 66, 183 |
| Conread position: | 135-470 |
| Cow position: | chr10:62857806-62858152 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 135-477 |
| Cow position: | chr10:43790123-43789774 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 121, 46 |
| Conread position: | 135-479 |
| Cow position: | chr10:18084985-18085332 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 6 |
| Conread position: | 136-452 |
| Cow position: | chr10:500649-500335 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 82, 119 |
| Conread position: | 136-478 |
| Cow position: | chr10:62865648-62865318 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 82, 31 |
| Conread position: | 137-471 |
| Cow position: | chr10:43697404-43697070 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 71, 97 |
| Conread position: | 139-475 |
| Cow position: | chr10:1611211-1610885 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 139-479 |
| Cow position: | chr10:41069712-41069372 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 48, 98 |
| Conread position: | 147-477 |
| Cow position: | chr10:6906289-6906639 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 34, 303 |
| Conread position: | 148-453 |
| Cow position: | chr10:28999081-28998781 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 64, 44 |
| Conread position: | 148-454 |
| Cow position: | chr10:13416710-13416382 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 119, 193 |
| Conread position: | 148-461 |
| Cow position: | chr10:45988563-45988877 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 138 |
| Conread position: | 148-476 |
| Cow position: | chr10:40877523-40877178 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 18, 185 |
| Conread position: | 148-476 |
| Cow position: | chr10:45352154-45351815 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 203 |
| Conread position: | 148-476 |
| Cow position: | chr10:50579686-50580016 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 72, 63 |
| Conread position: | 148-476 |
| Cow position: | chr10:53471202-53471521 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 64, 93 |
| Conread position: | 148-478 |
| Cow position: | chr10:33812493-33812164 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 60, 109 |
| Conread position: | 148-479 |
| Cow position: | chr10:316275-316605 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 149-460 |
| Cow position: | chr10:59534372-59534061 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 63, 92 |
| Conread position: | 150-477 |
| Cow position: | chr10:51774822-51774505 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 151-480 |
| Cow position: | chr10:39147346-39147666 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 104 |
| Conread position: | 154-418 |
| Cow position: | chr10:5827595-5827870 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 32, 160 |
| Conread position: | 165-479 |
| Cow position: | chr10:69262607-69262932 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 170-477 |
| Cow position: | chr10:9559824-9559506 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 175-419 |
| Cow position: | chr10:11349075-11348825 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 177-498 |
| Cow position: | chr10:52612717-52612380 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 178-476 |
| Cow position: | chr10:12519628-12519926 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 74 |
| Conread position: | 178-477 |
| Cow position: | chr10:65095488-65095175 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 34, 71 |
| Conread position: | 182-479 |
| Cow position: | chr10:33863585-33863259 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 300 |
| Conread position: | 183-464 |
| Cow position: | chr10:37380072-37379781 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 29, 198 |
| Conread position: | 288-475 |
| Cow position: | chr10:8679834-8680027 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 21, 107 |
| Conread position: | 290-454 |
| Cow position: | chr10:48846353-48846193 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 290-471 |
| Cow position: | chr10:47790497-47790318 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 290-472 |
| Cow position: | chr10:1942660-1942480 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 290-477 |
| Cow position: | chr10:21385240-21385053 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 290-478 |
| Cow position: | chr10:63249511-63249696 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 290-479 |
| Cow position: | chr10:11083646-11083833 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 311-474 |
| Cow position: | chr10:49197698-49197534 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 19, 79 |
Show alignments to all cow chromosomes.