Cow genome map

Conread name: Ss1.1-rret22_k12.5

Conread position: 1-261
Cow position: chr11:20836847-20836582 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 56-412
Cow position: chr11:75576598-75576233 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 239
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 35, 19

Conread position: 101-476
Cow position: chr11:16743297-16742900 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 277
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 107, 16

Conread position: 116-460
Cow position: chr11:56268835-56268496 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 233
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 8, 54

Conread position: 120-473
Cow position: chr11:48683028-48682682 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 248
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 92, 11

Conread position: 121-456
Cow position: chr11:26081212-26081560 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 231
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 83, 62

Conread position: 121-476
Cow position: chr11:20036266-20035902 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 246
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 44, 14

Conread position: 125-458
Cow position: chr11:35651046-35651388 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 237
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 83, 120

Conread position: 125-477
Cow position: chr11:39175989-39175633 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 236
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 83, 136

Conread position: 128-479
Cow position: chr11:28221103-28220736 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 249
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 80, 138

Conread position: 129-487
Cow position: chr11:65117213-65117580 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 247
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 82, 188

Conread position: 133-479
Cow position: chr11:61055388-61055738 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 230
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 81, 115

Conread position: 135-358
Cow position: chr11:65704134-65703906 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 150, 30

Conread position: 135-460
Cow position: chr11:76958785-76959097 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 214
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 73, 30

Conread position: 137-475
Cow position: chr11:41280408-41280058 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 137-477
Cow position: chr11:55933421-55933783 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 140-477
Cow position: chr11:77472054-77471720 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 82, 129

Conread position: 147-296
Cow position: chr11:14707678-14707827 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 34

Conread position: 147-475
Cow position: chr11:42505772-42505434 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 233
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 65, 10

Conread position: 147-479
Cow position: chr11:79970664-79971014 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 238
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 78, 273

Conread position: 148-326
Cow position: chr11:7968394-7968578 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 129, 63

Conread position: 148-468
Cow position: chr11:53513633-53513947 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 211
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 14, 40

Conread position: 148-472
Cow position: chr11:25166847-25167174 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 217
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 60, 230

Conread position: 148-476
Cow position: chr11:54056068-54056397 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 227
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 77, 67

Conread position: 148-476
Cow position: chr11:66871754-66871408 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 233
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 64, 35

Conread position: 148-477
Cow position: chr11:24514685-24514350 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 232
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 64, 161

Conread position: 148-477
Cow position: chr11:65372863-65373203 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 227
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 62, 117

Conread position: 148-482
Cow position: chr11:42392950-42393288 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 234
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 14, 46

Conread position: 153-477
Cow position: chr11:84387017-84386702 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 230
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 59, 22

Conread position: 156-484
Cow position: chr11:48040634-48040973 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 232
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 47, 156

Conread position: 165-493
Cow position: chr11:2327886-2328225 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 228
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 38, 224

Conread position: 170-466
Cow position: chr11:14144394-14144093 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 200
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 42, 13

Conread position: 175-452
Cow position: chr11:71908403-71908131 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 194
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 42, 14

Conread position: 175-479
Cow position: chr11:45475749-45476044 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 217
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 37, 107

Conread position: 175-485
Cow position: chr11:39278366-39278690 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 66

Conread position: 231-429
Cow position: chr11:83643902-83643710 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 99, 51

Conread position: 280-477
Cow position: chr11:73195013-73194820 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 30

Conread position: 287-469
Cow position: chr11:76697398-76697213 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 109

Conread position: 287-476
Cow position: chr11:37968896-37969085 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 129

Conread position: 289-507
Cow position: chr11:42042339-42042120 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 197, 139

Conread position: 294-479
Cow position: chr11:77632119-77632300 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 158, 14

Conread position: 317-477
Cow position: chr11:41459510-41459667 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 17, 116

Conread position: 331-479
Cow position: chr11:7969175-7969324 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 62

Show alignments to all cow chromosomes.