Cow genome map
| Conread name: | Ss1.1-rret22_k12.5 |
| Conread position: | 125-370 |
| Cow position: | chr12:31527083-31526835 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 83, 50 |
| Conread position: | 125-477 |
| Cow position: | chr12:9591531-9591891 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 139 |
| Conread position: | 125-479 |
| Cow position: | chr12:40706541-40706895 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 86, 138 |
| Conread position: | 128-478 |
| Cow position: | chr12:12737022-12736679 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 248 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 17, 57 |
| Conread position: | 129-479 |
| Cow position: | chr12:25869542-25869911 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 75, 54 |
| Conread position: | 133-479 |
| Cow position: | chr12:33257754-33257404 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 51 |
| Conread position: | 135-431 |
| Cow position: | chr12:2003785-2003483 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 8 |
| Conread position: | 148-439 |
| Cow position: | chr12:14316947-14316642 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 65, 174 |
| Conread position: | 148-466 |
| Cow position: | chr12:10252970-10253304 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 166 |
| Conread position: | 148-476 |
| Cow position: | chr12:39178753-39179088 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 148-477 |
| Cow position: | chr12:13811474-13811823 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 251 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 21, 14 |
| Conread position: | 148-477 |
| Cow position: | chr12:27601621-27601280 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 148-489 |
| Cow position: | chr12:36525404-36525755 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 59, 120 |
| Conread position: | 148-489 |
| Cow position: | chr12:41700480-41700826 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 246 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 150-465 |
| Cow position: | chr12:16918733-16918416 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 58, 167 |
| Conread position: | 151-477 |
| Cow position: | chr12:10402532-10402195 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 61, 227 |
| Conread position: | 152-449 |
| Cow position: | chr12:13028771-13029065 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 95 |
| Conread position: | 155-497 |
| Cow position: | chr12:45426929-45426606 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 173, 52 |
| Conread position: | 174-473 |
| Cow position: | chr12:22989917-22990213 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 180-458 |
| Cow position: | chr12:9580935-9580661 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 105, 74 |
| Conread position: | 292-468 |
| Cow position: | chr12:28867767-28867588 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 318-477 |
| Cow position: | chr12:4934033-4933875 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 329-476 |
| Cow position: | chr12:33336419-33336271 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
Show alignments to all cow chromosomes.