Cow genome map
| Conread name: | Ss1.1-rret22_k12.5 |
| Conread position: | 127-477 |
| Cow position: | chr15:1858407-1858757 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 80, 155 |
| Conread position: | 128-481 |
| Cow position: | chr15:40209706-40210067 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 84, 47 |
| Conread position: | 129-333 |
| Cow position: | chr15:28050921-28051133 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 155, 78 |
| Conread position: | 129-483 |
| Cow position: | chr15:41964257-41963905 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 64, 177 |
| Conread position: | 132-477 |
| Cow position: | chr15:11684651-11684309 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 178 |
| Conread position: | 135-462 |
| Cow position: | chr15:22217201-22216872 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 73, 120 |
| Conread position: | 135-464 |
| Cow position: | chr15:37425124-37424794 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 73, 55 |
| Conread position: | 135-475 |
| Cow position: | chr15:46051691-46052030 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 118 |
| Conread position: | 135-477 |
| Cow position: | chr15:12053245-12052888 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 78, 113 |
| Conread position: | 135-477 |
| Cow position: | chr15:21855829-21856176 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 136-472 |
| Cow position: | chr15:22131700-22132043 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 70, 106 |
| Conread position: | 147-473 |
| Cow position: | chr15:34524392-34524071 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 148-283 |
| Cow position: | chr15:16716195-16716059 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 105 |
| Conread position: | 148-385 |
| Cow position: | chr15:25426478-25426718 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 60, 105 |
| Conread position: | 148-469 |
| Cow position: | chr15:40788641-40788959 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 75 |
| Conread position: | 148-476 |
| Cow position: | chr15:5650616-5650271 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 148-476 |
| Cow position: | chr15:10823899-10823576 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 148-477 |
| Cow position: | chr15:43842678-43843015 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 149-479 |
| Cow position: | chr15:16781815-16781463 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 150-428 |
| Cow position: | chr15:41959972-41959686 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 58, 104 |
| Conread position: | 167-476 |
| Cow position: | chr15:15397818-15397511 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 45, 101 |
| Conread position: | 168-477 |
| Cow position: | chr15:6497476-6497159 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 152 |
| Conread position: | 170-488 |
| Cow position: | chr15:5998637-5998302 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 83 |
| Conread position: | 174-499 |
| Cow position: | chr15:18017608-18017272 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 222 |
| Conread position: | 176-473 |
| Cow position: | chr15:28052326-28052619 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 31, 72 |
| Conread position: | 187-503 |
| Cow position: | chr15:10496302-10496624 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 255-477 |
| Cow position: | chr15:37727482-37727256 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 5, 60 |
| Conread position: | 290-479 |
| Cow position: | chr15:41452046-41451850 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 335-471 |
| Cow position: | chr15:39996783-39996919 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 122 |
Show alignments to all cow chromosomes.