Cow genome map
| Conread name: | Ss1.1-rret22_k12.5 |
| Conread position: | 111-479 |
| Cow position: | chr16:29314829-29314457 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 257 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 107, 72 |
| Conread position: | 125-497 |
| Cow position: | chr16:40863737-40863370 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 89 |
| Conread position: | 126-478 |
| Cow position: | chr16:22873536-22873894 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 53 |
| Conread position: | 130-478 |
| Cow position: | chr16:9696617-9696973 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 82, 49 |
| Conread position: | 134-478 |
| Cow position: | chr16:14434327-14434667 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 48, 29 |
| Conread position: | 135-427 |
| Cow position: | chr16:29384756-29385053 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 131, 262 |
| Conread position: | 135-472 |
| Cow position: | chr16:8855231-8855582 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 83, 183 |
| Conread position: | 135-479 |
| Cow position: | chr16:30983543-30983193 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 136 |
| Conread position: | 148-284 |
| Cow position: | chr16:14285299-14285163 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 56, 35 |
| Conread position: | 148-445 |
| Cow position: | chr16:20671368-20671666 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 60, 100 |
| Conread position: | 148-471 |
| Cow position: | chr16:53680215-53680544 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 54, 166 |
| Conread position: | 148-474 |
| Cow position: | chr16:16640590-16640249 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 70, 37 |
| Conread position: | 148-474 |
| Cow position: | chr16:27839762-27840083 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 134 |
| Conread position: | 148-477 |
| Cow position: | chr16:1544840-1545179 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 70, 42 |
| Conread position: | 148-477 |
| Cow position: | chr16:23758946-23759264 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 148-479 |
| Cow position: | chr16:51969173-51969518 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 56, 119 |
| Conread position: | 148-490 |
| Cow position: | chr16:39171387-39171733 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 150-468 |
| Cow position: | chr16:37121243-37121569 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 150-477 |
| Cow position: | chr16:30959998-30960339 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 155-453 |
| Cow position: | chr16:28077938-28078249 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 156-473 |
| Cow position: | chr16:36134169-36134499 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 170-471 |
| Cow position: | chr16:52298305-52298603 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 183-477 |
| Cow position: | chr16:20884651-20884360 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 108 |
| Conread position: | 288-472 |
| Cow position: | chr16:30660035-30660217 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 290-473 |
| Cow position: | chr16:9471193-9471007 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 18 |
Show alignments to all cow chromosomes.