Cow genome map
| Conread name: | Ss1.1-rret22_k12.5 |
| Conread position: | 96-444 |
| Cow position: | chr2:67491409-67491766 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 125-488 |
| Cow position: | chr2:64902124-64901758 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 126-479 |
| Cow position: | chr2:2729302-2729671 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 127-478 |
| Cow position: | chr2:46922251-46921882 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 85, 56 |
| Conread position: | 129-479 |
| Cow position: | chr2:37659801-37659451 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 96, 56 |
| Conread position: | 133-450 |
| Cow position: | chr2:58204832-58205162 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 130 |
| Conread position: | 135-459 |
| Cow position: | chr2:14766577-14766250 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 77, 39 |
| Conread position: | 135-473 |
| Cow position: | chr2:38282832-38283177 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 75, 208 |
| Conread position: | 135-476 |
| Cow position: | chr2:74375961-74376315 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 96, 60 |
| Conread position: | 135-477 |
| Cow position: | chr2:54069150-54068807 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 77, 177 |
| Conread position: | 136-479 |
| Cow position: | chr2:13176685-13176322 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 137-469 |
| Cow position: | chr2:74373766-74374110 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 51, 233 |
| Conread position: | 144-478 |
| Cow position: | chr2:62977746-62978076 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 130, 7 |
| Conread position: | 147-418 |
| Cow position: | chr2:62671544-62671823 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 147-431 |
| Cow position: | chr2:4213890-4214187 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 196 |
| Conread position: | 147-473 |
| Cow position: | chr2:55301468-55301132 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 177 |
| Conread position: | 147-477 |
| Cow position: | chr2:55067787-55068122 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 88 |
| Conread position: | 148-283 |
| Cow position: | chr2:47401372-47401238 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 148-355 |
| Cow position: | chr2:34494243-34494037 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 62, 100 |
| Conread position: | 148-454 |
| Cow position: | chr2:26439578-26439883 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 148-457 |
| Cow position: | chr2:35732470-35732147 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 148-461 |
| Cow position: | chr2:80967789-80968096 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 179, 80 |
| Conread position: | 148-462 |
| Cow position: | chr2:84762175-84761848 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 148-464 |
| Cow position: | chr2:67943209-67942887 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 83, 101 |
| Conread position: | 148-476 |
| Cow position: | chr2:4770474-4770141 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 60, 236 |
| Conread position: | 148-478 |
| Cow position: | chr2:67041382-67041059 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 83 |
| Conread position: | 148-488 |
| Cow position: | chr2:50112576-50112231 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 96, 56 |
| Conread position: | 149-479 |
| Cow position: | chr2:48447086-48446771 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 25, 81 |
| Conread position: | 150-473 |
| Cow position: | chr2:81159391-81159715 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 53, 79 |
| Conread position: | 150-476 |
| Cow position: | chr2:79586274-79586616 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 153-469 |
| Cow position: | chr2:43682117-43682451 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 6, 59 |
| Conread position: | 154-456 |
| Cow position: | chr2:12832821-12833120 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 58, 102 |
| Conread position: | 174-534 |
| Cow position: | chr2:32195860-32196231 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 89 |
| Conread position: | 290-479 |
| Cow position: | chr2:35761071-35760879 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 290-518 |
| Cow position: | chr2:41916723-41916949 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 321-476 |
| Cow position: | chr2:17368323-17368476 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 9, 117 |
| Conread position: | 321-491 |
| Cow position: | chr2:72283027-72282855 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
Show alignments to all cow chromosomes.