Cow genome map
| Conread name: | Ss1.1-rret22_k12.5 |
| Conread position: | 125-477 |
| Cow position: | chr3:11971114-11970762 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 160, 129 |
| Conread position: | 126-454 |
| Cow position: | chr3:29619525-29619861 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 86, 130 |
| Conread position: | 128-476 |
| Cow position: | chr3:42273449-42273814 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 153, 77 |
| Conread position: | 129-454 |
| Cow position: | chr3:49232757-49232430 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 83, 45 |
| Conread position: | 129-479 |
| Cow position: | chr3:64678434-64678084 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 82, 49 |
| Conread position: | 135-283 |
| Cow position: | chr3:52858864-52858715 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 135-467 |
| Cow position: | chr3:56502995-56503333 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 194 |
| Conread position: | 135-476 |
| Cow position: | chr3:7151619-7151968 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 135-479 |
| Cow position: | chr3:36061571-36061217 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 49 |
| Conread position: | 135-483 |
| Cow position: | chr3:25015918-25016283 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 271 |
| Conread position: | 136-474 |
| Cow position: | chr3:6678633-6678973 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 33, 218 |
| Conread position: | 137-476 |
| Cow position: | chr3:20840066-20840386 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 29, 153 |
| Conread position: | 139-477 |
| Cow position: | chr3:11597223-11597558 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 79, 102 |
| Conread position: | 145-477 |
| Cow position: | chr3:52476331-52476002 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 148-351 |
| Cow position: | chr3:69878368-69878161 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 75 |
| Conread position: | 148-455 |
| Cow position: | chr3:30339557-30339234 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 148-475 |
| Cow position: | chr3:44391747-44392085 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 86, 179 |
| Conread position: | 148-477 |
| Cow position: | chr3:25883426-25883102 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 59, 109 |
| Conread position: | 148-477 |
| Cow position: | chr3:72048607-72048276 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 77, 51 |
| Conread position: | 148-477 |
| Cow position: | chr3:79051632-79051306 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 148-488 |
| Cow position: | chr3:74057410-74057049 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 74, 35 |
| Conread position: | 150-500 |
| Cow position: | chr3:69466650-69466995 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 161-479 |
| Cow position: | chr3:73944614-73944943 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 52, 132 |
| Conread position: | 166-457 |
| Cow position: | chr3:66925250-66925545 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 166-471 |
| Cow position: | chr3:288036-288343 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 46, 90 |
| Conread position: | 174-484 |
| Cow position: | chr3:42012449-42012126 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 182-459 |
| Cow position: | chr3:83729459-83729739 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 187-479 |
| Cow position: | chr3:59062358-59062651 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 92, 101 |
| Conread position: | 195-479 |
| Cow position: | chr3:22632247-22631952 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 18, 86 |
| Conread position: | 279-464 |
| Cow position: | chr3:74064303-74064118 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 28 |
| Conread position: | 288-473 |
| Cow position: | chr3:48574511-48574695 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 292-478 |
| Cow position: | chr3:13499983-13500164 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 317-489 |
| Cow position: | chr3:11294721-11294550 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 27 |
Show alignments to all cow chromosomes.