Cow genome map
| Conread name: | Ss1.1-rret22_k12.5 |
| Conread position: | 98-451 |
| Cow position: | chr4:3593666-3593304 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 115, 49 |
| Conread position: | 122-458 |
| Cow position: | chr4:11575885-11576219 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 85, 100 |
| Conread position: | 126-460 |
| Cow position: | chr4:44583414-44583758 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 78, 272 |
| Conread position: | 128-450 |
| Cow position: | chr4:49951587-49951264 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 128-477 |
| Cow position: | chr4:10434635-10434277 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 80, 122 |
| Conread position: | 129-479 |
| Cow position: | chr4:23792264-23791916 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 78, 126 |
| Conread position: | 133-455 |
| Cow position: | chr4:32053611-32053945 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 75, 223 |
| Conread position: | 133-470 |
| Cow position: | chr4:40559030-40558688 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 29, 184 |
| Conread position: | 133-472 |
| Cow position: | chr4:64656151-64656476 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 33, 5 |
| Conread position: | 135-477 |
| Cow position: | chr4:14219924-14219572 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 83, 34 |
| Conread position: | 135-477 |
| Cow position: | chr4:28353664-28354012 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 84, 181 |
| Conread position: | 135-477 |
| Cow position: | chr4:43448779-43449129 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 73, 261 |
| Conread position: | 135-482 |
| Cow position: | chr4:26950120-26949758 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 27, 67 |
| Conread position: | 139-485 |
| Cow position: | chr4:21566813-21566465 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 142-477 |
| Cow position: | chr4:23883230-23883560 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 148-392 |
| Cow position: | chr4:60600521-60600760 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 148-454 |
| Cow position: | chr4:49454345-49454030 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 69, 100 |
| Conread position: | 148-475 |
| Cow position: | chr4:4665274-4664952 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 11, 103 |
| Conread position: | 148-477 |
| Cow position: | chr4:11534592-11534260 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 64, 88 |
| Conread position: | 148-477 |
| Cow position: | chr4:43466739-43466400 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 150-467 |
| Cow position: | chr4:17212391-17212722 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 59, 283 |
| Conread position: | 150-471 |
| Cow position: | chr4:34904677-34904347 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 62, 175 |
| Conread position: | 152-479 |
| Cow position: | chr4:35160464-35160134 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 30 |
| Conread position: | 153-488 |
| Cow position: | chr4:60197315-60197657 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 167-473 |
| Cow position: | chr4:50223529-50223214 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 121 |
| Conread position: | 170-452 |
| Cow position: | chr4:39221877-39221599 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 127 |
| Conread position: | 170-477 |
| Cow position: | chr4:26924871-26924565 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 173-476 |
| Cow position: | chr4:19195962-19195658 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 68 |
| Conread position: | 182-475 |
| Cow position: | chr4:39782012-39781710 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 182-479 |
| Cow position: | chr4:53962823-53962513 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 30, 66 |
| Conread position: | 188-487 |
| Cow position: | chr4:44837953-44837652 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 198-479 |
| Cow position: | chr4:58494441-58494724 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 227-477 |
| Cow position: | chr4:55245304-55245046 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 90 |
| Conread position: | 286-477 |
| Cow position: | chr4:15238602-15238792 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 287-483 |
| Cow position: | chr4:31191926-31191732 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 20, 50 |
| Conread position: | 288-466 |
| Cow position: | chr4:30572052-30571875 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 324-479 |
| Cow position: | chr4:52340789-52340637 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 12, 138 |
Show alignments to all cow chromosomes.