Cow genome map
| Conread name: | Ss1.1-rret22_k12.5 |
| Conread position: | 111-479 |
| Cow position: | chr5:11365438-11365059 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 100, 50 |
| Conread position: | 114-452 |
| Cow position: | chr5:40339893-40340233 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 121-284 |
| Cow position: | chr5:32250750-32250593 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 124-473 |
| Cow position: | chr5:25042953-25042609 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 241 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 126-476 |
| Cow position: | chr5:35957146-35956789 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 99, 276 |
| Conread position: | 129-450 |
| Cow position: | chr5:67672559-67672897 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 133-436 |
| Cow position: | chr5:38946845-38946556 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 107 |
| Conread position: | 135-425 |
| Cow position: | chr5:50719559-50719856 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 135-473 |
| Cow position: | chr5:25897733-25898067 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 77, 99 |
| Conread position: | 135-479 |
| Cow position: | chr5:14310288-14309930 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 148, 76 |
| Conread position: | 141-477 |
| Cow position: | chr5:30075174-30075523 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 148-283 |
| Cow position: | chr5:17931270-17931405 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 120 |
| Conread position: | 148-452 |
| Cow position: | chr5:22196099-22195791 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 64, 169 |
| Conread position: | 148-454 |
| Cow position: | chr5:37939497-37939205 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 63, 107 |
| Conread position: | 148-471 |
| Cow position: | chr5:33305119-33304802 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 62, 108 |
| Conread position: | 148-477 |
| Cow position: | chr5:43925452-43925793 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 14, 264 |
| Conread position: | 149-477 |
| Cow position: | chr5:5402859-5402533 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 133 |
| Conread position: | 150-473 |
| Cow position: | chr5:48384721-48385047 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 97 |
| Conread position: | 150-476 |
| Cow position: | chr5:11792771-11793097 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 152-395 |
| Cow position: | chr5:5453106-5453346 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 98 |
| Conread position: | 153-350 |
| Cow position: | chr5:50224871-50224668 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 30 |
| Conread position: | 166-471 |
| Cow position: | chr5:17355222-17354909 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 42, 236 |
| Conread position: | 169-475 |
| Cow position: | chr5:6939657-6939982 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 178-477 |
| Cow position: | chr5:21121235-21120939 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 182-482 |
| Cow position: | chr5:5207992-5208284 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 183-476 |
| Cow position: | chr5:13077198-13077501 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 216 |
| Conread position: | 213-476 |
| Cow position: | chr5:46521020-46521274 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 289-477 |
| Cow position: | chr5:40901157-40900966 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 163, 28 |
Show alignments to all cow chromosomes.