Cow genome map

Conread name: Ss1.1-rret22_k12.5

Conread position: 133-476
Cow position: chr6:47813489-47813147 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 85, 178

Conread position: 135-471
Cow position: chr6:5100821-5101155 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 225
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 77, 12

Conread position: 135-477
Cow position: chr6:16716973-16717307 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 106, 72

Conread position: 135-479
Cow position: chr6:8461934-8461585 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 240
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 27, 45

Conread position: 136-505
Cow position: chr6:23493488-23493859 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 302

Conread position: 137-470
Cow position: chr6:58453351-58453687 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 220
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 75, 46

Conread position: 139-454
Cow position: chr6:18871837-18872167 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 71, 279

Conread position: 139-473
Cow position: chr6:29298454-29298115 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 240
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 16, 124

Conread position: 139-474
Cow position: chr6:54386875-54387221 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 82

Conread position: 139-479
Cow position: chr6:27194769-27195094 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 243
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 71, 78

Conread position: 139-495
Cow position: chr6:29300724-29300363 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 252
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 16, 124

Conread position: 147-470
Cow position: chr6:23687402-23687728 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 222
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 64, 94

Conread position: 147-472
Cow position: chr6:30340696-30341029 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 221
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 66, 171

Conread position: 147-477
Cow position: chr6:20542679-20542347 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 215
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 36

Conread position: 148-425
Cow position: chr6:42149747-42150020 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 60, 141

Conread position: 148-456
Cow position: chr6:48558007-48557691 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 206
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 78, 160

Conread position: 148-463
Cow position: chr6:57821376-57821703 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 227
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 25

Conread position: 148-470
Cow position: chr6:51896178-51896497 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 64, 17

Conread position: 148-476
Cow position: chr6:38763321-38763009 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 233
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 64, 16

Conread position: 148-477
Cow position: chr6:23701795-23701455 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 237
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 70, 38

Conread position: 148-479
Cow position: chr6:2404123-2404452 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 225
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 27

Conread position: 149-476
Cow position: chr6:21338239-21338567 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 231
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 93, 73

Conread position: 150-477
Cow position: chr6:18126511-18126189 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 221
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 58, 101

Conread position: 150-497
Cow position: chr6:34700399-34700055 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 253
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 62, 23

Conread position: 151-495
Cow position: chr6:2954756-2954403 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 240
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 59, 24

Conread position: 153-460
Cow position: chr6:62267796-62268109 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 210
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 59, 172

Conread position: 156-469
Cow position: chr6:2988925-2988601 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 218
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 159

Conread position: 157-475
Cow position: chr6:67830915-67831239 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 220
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 55, 18

Conread position: 177-462
Cow position: chr6:23447889-23447591 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 203
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 35, 18

Conread position: 177-480
Cow position: chr6:61993727-61994026 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 207
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 33, 64

Conread position: 179-482
Cow position: chr6:45742731-45743042 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 210
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 35, 140

Conread position: 256-479
Cow position: chr6:53696110-53696335 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 7, 54

Conread position: 286-456
Cow position: chr6:23896734-23896899 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 22

Conread position: 288-472
Cow position: chr6:22880857-22880677 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 290-472
Cow position: chr6:29868554-29868374 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 0

Show alignments to all cow chromosomes.