Cow genome map
| Conread name: | Ss1.1-rret22_k12.5 |
| Conread position: | 114-278 |
| Cow position: | chr8:32227775-32227611 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 135-468 |
| Cow position: | chr8:13467794-13468128 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 73, 119 |
| Conread position: | 135-476 |
| Cow position: | chr8:33092878-33093211 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 135-486 |
| Cow position: | chr8:39064958-39065317 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 140-477 |
| Cow position: | chr8:11891589-11891932 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 79 |
| Conread position: | 145-471 |
| Cow position: | chr8:47148402-47148082 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 108 |
| Conread position: | 147-482 |
| Cow position: | chr8:11934435-11934772 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 147-502 |
| Cow position: | chr8:24115637-24115276 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 65, 109 |
| Conread position: | 148-391 |
| Cow position: | chr8:4510966-4511202 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 148-450 |
| Cow position: | chr8:17062881-17063172 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 148-470 |
| Cow position: | chr8:33623720-33623409 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 60, 104 |
| Conread position: | 149-477 |
| Cow position: | chr8:46972179-46971834 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 149-479 |
| Cow position: | chr8:22015136-22015479 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 150-390 |
| Cow position: | chr8:10628647-10628397 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 163 |
| Conread position: | 150-477 |
| Cow position: | chr8:22449422-22449104 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 62, 193 |
| Conread position: | 150-477 |
| Cow position: | chr8:37685661-37685326 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 150-478 |
| Cow position: | chr8:36955800-36955471 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 98 |
| Conread position: | 151-475 |
| Cow position: | chr8:3694975-3694643 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 154-442 |
| Cow position: | chr8:50471697-50471992 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 54, 201 |
| Conread position: | 154-454 |
| Cow position: | chr8:20883427-20883740 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 167-488 |
| Cow position: | chr8:22036986-22036649 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 82, 73 |
| Conread position: | 179-477 |
| Cow position: | chr8:8737728-8738017 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 220-477 |
| Cow position: | chr8:22282439-22282188 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 288-470 |
| Cow position: | chr8:45069033-45068851 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 290-473 |
| Cow position: | chr8:3702357-3702177 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 290-477 |
| Cow position: | chr8:49202489-49202671 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 290-480 |
| Cow position: | chr8:5933211-5933405 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 293-454 |
| Cow position: | chr8:51510163-51510323 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 293-479 |
| Cow position: | chr8:25246362-25246178 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 15 |
Show alignments to all cow chromosomes.