Cow genome map
| Conread name: | Ss1.1-rret22_k12.5 |
| Conread position: | 124-486 |
| Cow position: | chr9:30759018-30758647 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 38, 56 |
| Conread position: | 128-476 |
| Cow position: | chr9:12693000-12692636 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 85, 120 |
| Conread position: | 135-477 |
| Cow position: | chr9:46248627-46248975 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 90 |
| Conread position: | 141-474 |
| Cow position: | chr9:27331902-27332239 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 66, 203 |
| Conread position: | 147-273 |
| Cow position: | chr9:15821485-15821609 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 57, 36 |
| Conread position: | 147-475 |
| Cow position: | chr9:21251923-21252264 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 147-477 |
| Cow position: | chr9:40278962-40278629 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 60, 93 |
| Conread position: | 148-411 |
| Cow position: | chr9:49746086-49745822 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 64, 53 |
| Conread position: | 148-425 |
| Cow position: | chr9:30332015-30332291 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 148-473 |
| Cow position: | chr9:37173111-37172796 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 148-491 |
| Cow position: | chr9:27383076-27383424 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 148-502 |
| Cow position: | chr9:55004291-55003925 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 45, 104 |
| Conread position: | 150-477 |
| Cow position: | chr9:28433678-28433344 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 58, 104 |
| Conread position: | 150-486 |
| Cow position: | chr9:12382067-12382409 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 152-474 |
| Cow position: | chr9:44178041-44178367 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 161-477 |
| Cow position: | chr9:9604350-9604024 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 171-464 |
| Cow position: | chr9:59179142-59178846 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 41, 70 |
| Conread position: | 174-492 |
| Cow position: | chr9:40627429-40627756 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 194-475 |
| Cow position: | chr9:42848231-42848524 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 288-471 |
| Cow position: | chr9:33172502-33172680 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 290-475 |
| Cow position: | chr9:56730946-56731130 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 293-476 |
| Cow position: | chr9:28978325-28978504 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 77 |
| Conread position: | 311-487 |
| Cow position: | chr9:42795007-42795184 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
Show alignments to all cow chromosomes.