Cow genome map

Conread name: Ss1.1-rret22_k12.5

Conread position: 111-474
Cow position: chrX:28090848-28090476 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 257
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 28, 81

Conread position: 116-444
Cow position: chrX:41241087-41241414 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 212
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 46, 83

Conread position: 121-270
Cow position: chrX:29534381-29534230 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 121-278
Cow position: chrX:23897449-23897293 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 83, 62

Conread position: 121-470
Cow position: chrX:4085077-4084727 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 245
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 87, 40

Conread position: 127-275
Cow position: chrX:35228538-35228388 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 133-466
Cow position: chrX:31265828-31266175 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 239
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 182

Conread position: 133-477
Cow position: chrX:8929667-8929317 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 241
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 79, 112

Conread position: 135-475
Cow position: chrX:29475698-29476044 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 225
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 28, 183

Conread position: 135-475
Cow position: chrX:33762634-33762287 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 233
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 77, 116

Conread position: 135-477
Cow position: chrX:41243596-41243266 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 245
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 77, 117

Conread position: 137-477
Cow position: chrX:4280324-4280674 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 238
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 75, 188

Conread position: 147-284
Cow position: chrX:36078650-36078513 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 34

Conread position: 147-449
Cow position: chrX:7996517-7996209 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 32

Conread position: 147-477
Cow position: chrX:34795194-34795535 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 236
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 15, 29

Conread position: 148-267
Cow position: chrX:17713744-17713624 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 148-475
Cow position: chrX:7431918-7431589 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 224
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 13, 191

Conread position: 148-476
Cow position: chrX:10989782-10990122 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 77, 31

Conread position: 148-477
Cow position: chrX:7460088-7459745 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 228
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 36

Conread position: 148-477
Cow position: chrX:33779715-33779373 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 233
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 72, 169

Conread position: 148-477
Cow position: chrX:38890255-38890596 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 230
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 100

Conread position: 148-486
Cow position: chrX:43786260-43786607 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 227
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 64, 201

Conread position: 149-419
Cow position: chrX:35552085-35551813 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 191
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 59, 102

Conread position: 149-460
Cow position: chrX:27379377-27379688 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 221
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 19, 102

Conread position: 151-477
Cow position: chrX:38173796-38174128 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 220
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 61, 130

Conread position: 165-481
Cow position: chrX:36101758-36101434 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 220
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 17, 75

Conread position: 167-442
Cow position: chrX:28822316-28822607 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 192
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 172-479
Cow position: chrX:2067291-2066984 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 219
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 40, 6

Conread position: 182-476
Cow position: chrX:25361211-25361523 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 30, 57

Conread position: 203-482
Cow position: chrX:44215021-44214746 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 187
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 17, 66

Conread position: 286-477
Cow position: chrX:14137534-14137342 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 57

Conread position: 287-480
Cow position: chrX:15364611-15364804 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 40, 21

Conread position: 288-477
Cow position: chrX:29524652-29524839 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 118, 20

Conread position: 288-479
Cow position: chrX:19673024-19673224 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 21, 70

Conread position: 290-473
Cow position: chrX:14602644-14602461 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 23

Conread position: 293-479
Cow position: chrX:39878191-39878007 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 37, 20

Conread position: 318-477
Cow position: chrX:30942391-30942233 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 85

Show alignments to all cow chromosomes.