Cow genome map
| Conread name: | Ss1.1-rsag020_e16.5 |
| Conread position: | 1-273 |
| Cow position: | chr1:28492075-28492339 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 156, 13 |
| Conread position: | 1-323 |
| Cow position: | chr1:61221368-61221035 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 1-328 |
| Cow position: | chr1:30672794-30672463 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 89, 14 |
| Conread position: | 5-251 |
| Cow position: | chr1:48266054-48265809 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 167, 9 |
| Conread position: | 5-273 |
| Cow position: | chr1:37308943-37309218 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 112, 9 |
| Conread position: | 8-306 |
| Cow position: | chr1:71020828-71021117 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 150, 6 |
| Conread position: | 8-323 |
| Cow position: | chr1:37466289-37466608 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 69, 144 |
| Conread position: | 10-313 |
| Cow position: | chr1:56080803-56081124 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 122, 20 |
| Conread position: | 11-492 |
| Cow position: | chr1:66218732-66218242 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 21 |
| Conread position: | 13-323 |
| Cow position: | chr1:56643966-56644282 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 146, 15 |
| Conread position: | 13-343 |
| Cow position: | chr1:37556354-37556009 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 14-179 |
| Cow position: | chr1:65059652-65059487 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 72 |
| Conread position: | 14-323 |
| Cow position: | chr1:41277236-41277560 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 145, 23 |
| Conread position: | 16-200 |
| Cow position: | chr1:51848583-51848772 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 143, 135 |
| Conread position: | 29-323 |
| Cow position: | chr1:35731895-35732211 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 29-419 |
| Cow position: | chr1:26053230-26053628 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 29 |
| Conread position: | 39-290 |
| Cow position: | chr1:51257500-51257243 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 139, 112 |
| Conread position: | 39-290 |
| Cow position: | chr1:79754398-79754660 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 39-321 |
| Cow position: | chr1:43221166-43221466 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 61, 48 |
| Conread position: | 39-323 |
| Cow position: | chr1:73244382-73244088 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 41-257 |
| Cow position: | chr1:61702744-61702962 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 117, 25 |
| Conread position: | 44-243 |
| Cow position: | chr1:64327201-64326996 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 114, 52 |
| Conread position: | 52-332 |
| Cow position: | chr1:93858408-93858120 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 107, 19 |
| Conread position: | 59-332 |
| Cow position: | chr1:57571723-57571430 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 60-332 |
| Cow position: | chr1:30785654-30785942 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 93 |
| Conread position: | 61-332 |
| Cow position: | chr1:88298098-88297807 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 62-328 |
| Cow position: | chr1:2788806-2788520 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 75-323 |
| Cow position: | chr1:23117335-23117601 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.