Cow genome map
| Conread name: | Ss1.1-rsag020_e16.5 |
| Conread position: | 1-408 |
| Cow position: | chr10:29185388-29184979 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 4-273 |
| Cow position: | chr10:34810931-34810661 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 153, 10 |
| Conread position: | 5-215 |
| Cow position: | chr10:51427602-51427396 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 5-254 |
| Cow position: | chr10:13855926-13855675 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 151, 9 |
| Conread position: | 5-257 |
| Cow position: | chr10:25976152-25975896 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 143, 9 |
| Conread position: | 5-290 |
| Cow position: | chr10:4019447-4019160 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 138, 9 |
| Conread position: | 5-291 |
| Cow position: | chr10:50600196-50600480 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 150, 11 |
| Conread position: | 5-332 |
| Cow position: | chr10:25012818-25013149 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 8-323 |
| Cow position: | chr10:35443866-35443546 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 150, 6 |
| Conread position: | 11-341 |
| Cow position: | chr10:15486011-15485674 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 148, 31 |
| Conread position: | 13-332 |
| Cow position: | chr10:46664556-46664228 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 146, 20 |
| Conread position: | 13-352 |
| Cow position: | chr10:29795158-29794808 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 145, 20 |
| Conread position: | 15-299 |
| Cow position: | chr10:26692497-26692202 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 143, 19 |
| Conread position: | 28-313 |
| Cow position: | chr10:53684107-53683808 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 29-299 |
| Cow position: | chr10:924181-924454 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 127, 213 |
| Conread position: | 29-304 |
| Cow position: | chr10:11108073-11108344 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 64, 41 |
| Conread position: | 39-173 |
| Cow position: | chr10:36897434-36897298 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 39-254 |
| Cow position: | chr10:20568616-20568393 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 39-321 |
| Cow position: | chr10:8843452-8843157 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 84, 198 |
| Conread position: | 39-332 |
| Cow position: | chr10:55641232-55640928 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 113, 18 |
| Conread position: | 39-346 |
| Cow position: | chr10:36582798-36583124 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 109, 98 |
| Conread position: | 41-319 |
| Cow position: | chr10:53210736-53211024 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 131, 57 |
| Conread position: | 43-323 |
| Cow position: | chr10:21937270-21936984 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 85 |
| Conread position: | 44-326 |
| Cow position: | chr10:26588768-26588472 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 45-350 |
| Cow position: | chr10:57744103-57743796 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 127 |
| Conread position: | 56-232 |
| Cow position: | chr10:5442456-5442636 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 102, 79 |
| Conread position: | 60-326 |
| Cow position: | chr10:25071664-25071940 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 61-322 |
| Cow position: | chr10:22979892-22980162 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 98, 179 |
| Conread position: | 82-332 |
| Cow position: | chr10:6012448-6012710 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 89-319 |
| Cow position: | chr10:4502204-4501957 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.