Cow genome map
| Conread name: | Ss1.1-rsag020_e16.5 |
| Conread position: | 1-243 |
| Cow position: | chr11:11318987-11319225 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 172, 11 |
| Conread position: | 4-164 |
| Cow position: | chr11:56106512-56106669 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 114, 11 |
| Conread position: | 5-271 |
| Cow position: | chr11:77437108-77436841 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 8-304 |
| Cow position: | chr11:9960061-9960354 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 150, 6 |
| Conread position: | 8-355 |
| Cow position: | chr11:52248469-52248120 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 150, 6 |
| Conread position: | 13-273 |
| Cow position: | chr11:15437623-15437363 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 145, 21 |
| Conread position: | 13-278 |
| Cow position: | chr11:35630343-35630069 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 15-294 |
| Cow position: | chr11:80287025-80287315 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 24-249 |
| Cow position: | chr11:55423306-55423076 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 135, 56 |
| Conread position: | 29-341 |
| Cow position: | chr11:35240704-35240375 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 50, 42 |
| Conread position: | 39-323 |
| Cow position: | chr11:78680578-78680285 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 188 |
| Conread position: | 39-330 |
| Cow position: | chr11:66605477-66605782 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 119, 137 |
| Conread position: | 39-332 |
| Cow position: | chr11:10758165-10758464 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 40-179 |
| Cow position: | chr11:11378872-11378737 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 40-412 |
| Cow position: | chr11:50178196-50178577 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 42 |
| Conread position: | 47-355 |
| Cow position: | chr11:39432917-39432601 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 112, 31 |
| Conread position: | 55-214 |
| Cow position: | chr11:54095124-54094958 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 60-323 |
| Cow position: | chr11:61313267-61313547 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 61-332 |
| Cow position: | chr11:58817138-58816856 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 98, 82 |
Show alignments to all cow chromosomes.