Cow genome map
| Conread name: | Ss1.1-rsag020_e16.5 |
| Conread position: | 1-179 |
| Cow position: | chr3:25062477-25062300 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 158, 13 |
| Conread position: | 1-229 |
| Cow position: | chr3:43426417-43426189 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 155, 13 |
| Conread position: | 1-278 |
| Cow position: | chr3:52514269-52513990 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 111, 13 |
| Conread position: | 5-321 |
| Cow position: | chr3:64404123-64404445 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 5-323 |
| Cow position: | chr3:77296253-77295939 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 130, 9 |
| Conread position: | 7-320 |
| Cow position: | chr3:200521-200198 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 172, 7 |
| Conread position: | 8-278 |
| Cow position: | chr3:1264279-1264011 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 151, 7 |
| Conread position: | 8-294 |
| Cow position: | chr3:22947855-22948139 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 150, 6 |
| Conread position: | 8-344 |
| Cow position: | chr3:56914687-56914345 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 152, 6 |
| Conread position: | 11-329 |
| Cow position: | chr3:70519490-70519822 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 69, 26 |
| Conread position: | 13-273 |
| Cow position: | chr3:51478513-51478242 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 112, 17 |
| Conread position: | 13-328 |
| Cow position: | chr3:14717450-14717122 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 146, 15 |
| Conread position: | 13-332 |
| Cow position: | chr3:62911061-62911394 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 120, 23 |
| Conread position: | 13-332 |
| Cow position: | chr3:73686760-73687098 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 33, 104 |
| Conread position: | 29-179 |
| Cow position: | chr3:45274493-45274647 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 30-179 |
| Cow position: | chr3:24677962-24678112 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 32-354 |
| Cow position: | chr3:38324101-38324442 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 149, 119 |
| Conread position: | 39-276 |
| Cow position: | chr3:22174062-22173816 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 138, 71 |
| Conread position: | 39-328 |
| Cow position: | chr3:56154057-56153765 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 195, 22 |
| Conread position: | 40-257 |
| Cow position: | chr3:15723173-15722941 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 42-348 |
| Cow position: | chr3:77369713-77370026 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 88 |
| Conread position: | 60-261 |
| Cow position: | chr3:15685307-15685513 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 61-326 |
| Cow position: | chr3:73936436-73936720 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 61-332 |
| Cow position: | chr3:42847110-42846819 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 64-352 |
| Cow position: | chr3:4080265-4080559 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 94, 79 |
| Conread position: | 68-328 |
| Cow position: | chr3:78546509-78546789 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 62 |
Show alignments to all cow chromosomes.