Cow genome map
| Conread name: | Ss1.1-rsag020_e16.5 |
| Conread position: | 1-254 |
| Cow position: | chrX:39546276-39546536 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 145, 13 |
| Conread position: | 1-332 |
| Cow position: | chrX:389205-388864 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 158, 13 |
| Conread position: | 4-229 |
| Cow position: | chrX:24006128-24006351 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 155, 8 |
| Conread position: | 5-273 |
| Cow position: | chrX:19556703-19556442 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 152, 9 |
| Conread position: | 5-298 |
| Cow position: | chrX:21973636-21973335 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 170, 9 |
| Conread position: | 5-301 |
| Cow position: | chrX:39294849-39294542 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 176, 9 |
| Conread position: | 5-323 |
| Cow position: | chrX:39383385-39383715 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 5-341 |
| Cow position: | chrX:33172265-33172612 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 66, 9 |
| Conread position: | 5-343 |
| Cow position: | chrX:41114896-41114550 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 5-345 |
| Cow position: | chrX:32002725-32003082 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 123, 11 |
| Conread position: | 8-216 |
| Cow position: | chrX:40322608-40322407 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 149, 6 |
| Conread position: | 8-329 |
| Cow position: | chrX:37960300-37959963 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 77, 7 |
| Conread position: | 11-254 |
| Cow position: | chrX:40517280-40517033 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 147, 20 |
| Conread position: | 13-252 |
| Cow position: | chrX:19228387-19228623 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 13-319 |
| Cow position: | chrX:33003942-33003619 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 148, 24 |
| Conread position: | 13-323 |
| Cow position: | chrX:20970610-20970282 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 145, 24 |
| Conread position: | 13-383 |
| Cow position: | chrX:20801463-20801078 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 146, 41 |
| Conread position: | 15-322 |
| Cow position: | chrX:19031113-19030798 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 136, 21 |
| Conread position: | 15-336 |
| Cow position: | chrX:29364649-29364347 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 29-254 |
| Cow position: | chrX:12750650-12750419 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 130, 124 |
| Conread position: | 30-218 |
| Cow position: | chrX:18691467-18691662 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 36-273 |
| Cow position: | chrX:22797912-22797670 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 39-229 |
| Cow position: | chrX:18684448-18684252 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 119, 17 |
| Conread position: | 39-257 |
| Cow position: | chrX:27534506-27534733 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 119, 84 |
| Conread position: | 39-320 |
| Cow position: | chrX:31981958-31982258 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 39-332 |
| Cow position: | chrX:3952520-3952208 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 119, 166 |
| Conread position: | 39-332 |
| Cow position: | chrX:22102101-22102417 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 40-323 |
| Cow position: | chrX:18769565-18769275 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 10, 103 |
| Conread position: | 43-326 |
| Cow position: | chrX:4630034-4630336 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 45-323 |
| Cow position: | chrX:41106349-41106643 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 196 |
| Conread position: | 46-323 |
| Cow position: | chrX:37955559-37955267 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 53-243 |
| Cow position: | chrX:21025383-21025578 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 79, 173 |
| Conread position: | 60-323 |
| Cow position: | chrX:488187-487903 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 60-328 |
| Cow position: | chrX:35288303-35288020 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 99, 147 |
| Conread position: | 61-229 |
| Cow position: | chrX:38999543-38999376 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 61-254 |
| Cow position: | chrX:16514599-16514803 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 61-323 |
| Cow position: | chrX:11674702-11674422 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 61-328 |
| Cow position: | chrX:1342621-1342907 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 61-328 |
| Cow position: | chrX:42540246-42539960 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 98, 10 |
| Conread position: | 61-332 |
| Cow position: | chrX:18898003-18898292 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 62-332 |
| Cow position: | chrX:40542313-40542028 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 66 |
| Conread position: | 62-332 |
| Cow position: | chrX:42380194-42380485 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 89-354 |
| Cow position: | chrX:24020506-24020775 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 146 |
| Conread position: | 113-348 |
| Cow position: | chrX:27647002-27646751 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 62, 234 |
Show alignments to all cow chromosomes.